SMTL ID : 3ksl.1

Structure of FPT bound to DATFP-DH-GPP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: Y.131 Chain B: H.194 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.194, H2O.8, H2O.8, H2O.16

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: D.297, C.299, Y.361, H.362 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.297, B:D.297, B:C.299, B:H.362, H2O.16

1 x SZH: (2S,6E)-8-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}-2,6-dimethyloct-6-en-1-yl (2S)-3,3,3-trifluoro-2-hydrazinopropanoate(Non-covalent)

SZH.3: 15 residues within 4Å: Chain A: K.164, Y.200 Chain B: W.102, Y.154, Y.205, C.206, H.248, G.250, Y.251, C.254, R.291, K.294, Y.300, W.303, Y.361 14 PLIP interactions: 12 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.251, A:Y.200 Water bridges: B:R.291, B:R.291, B:R.291, B:K.294, B:K.294, B:Y.365 Salt bridges: B:H.248, B:R.291, B:R.291, B:K.294, B:K.294, A:K.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hovlid, M.L. et al., Synthesis, properties, and applications of diazotrifluropropanoyl-containing photoactive analogs of farnesyl diphosphate containing modified linkages for enhanced stability. Chem.Biol.Drug Des. (2010)

Release Date

2009-12-22

Peptides

Farnesyltransferase, CAAX box, alpha: A
Protein farnesyltransferase subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Farnesyltransferase, CAAX box, alpha

Protein farnesyltransferase subunit beta

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