SMTL ID : 3ksq.1

Discovery of C-Imidazole Azaheptapyridine FPT Inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: Y.131 Chain B: H.194, E.198 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.194, B:E.198, B:E.198, H2O.1, H2O.2

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain B: D.297, C.299, Y.361, H.362 Ligands: Z96.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.297, B:D.297, B:C.299, B:H.362

1 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)

FPP.3: 17 residues within 4Å: Chain A: K.164, Y.166, Y.200 Chain B: W.102, R.202, Y.205, H.248, G.250, Y.251, C.254, G.290, R.291, K.294, Y.300, W.303, Y.361 Ligands: Z96.4 16 PLIP interactions: 13 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:W.102, B:Y.205, B:W.303, A:Y.200 Water bridges: B:G.290, B:R.291, B:R.291, B:R.291, A:K.164 Salt bridges: B:H.248, B:H.248, B:R.291, B:R.291, B:K.294, B:K.294, A:K.164

1 x Z96: tert-butyl 4-{(11S)-8-chloro-6-[(R)-hydroxy(1-methyl-1H-imidazol-5-yl)methyl]-11H-benzo[5,6]cyclohepta[1,2-b]pyridin-11-yl}piperazine-1-carboxylate(Non-covalent)

Z96.4: 15 residues within 4Å: Chain A: K.164 Chain B: A.92, Y.93, C.95, L.96, W.102, W.106, D.297, C.299, Y.300, D.359, Y.361, H.362 Ligands: ZN.2, FPP.3 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Y.93, B:L.96, B:D.359, B:Y.361 Water bridges: B:F.360 pi-Stacking: B:Y.361 Halogen bonds: A:K.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, H.Y. et al., Discovery of C-imidazole azaheptapyridine FPT inhibitors. Bioorg.Med.Chem.Lett. (2010)

Release Date

2010-01-26

Peptides

Farnesyltransferase, CAAX box, alpha: A
Protein farnesyltransferase subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Farnesyltransferase, CAAX box, alpha

Protein farnesyltransferase subunit beta

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