SMTL ID : 3l7j.1 (2 other biounits)

Structure of the Wall Teichoic Acid Polymerase TagF, H444N variant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.320 Chain B: K.327, R.333 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Salt bridges: A:R.320, B:K.327, B:R.333 SO4.2: 4 residues within 4Å: Chain A: K.327, R.333 Chain B: R.320, R.324 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Salt bridges: A:K.327, A:R.333, B:R.320 Hydrogen bonds: B:R.324 SO4.3: 5 residues within 4Å: Chain A: K.449, T.546, Y.623, S.624, S.625 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.624, A:S.625 SO4.15: 5 residues within 4Å: Chain B: K.449, T.546, Y.623, S.624, S.625 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.625 SO4.24: 4 residues within 4Å: Chain C: R.320, R.324 Chain D: K.327, R.333 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:R.324 Salt bridges: C:R.320, D:K.327, D:R.333 SO4.25: 3 residues within 4Å: Chain C: K.327, R.333 Chain D: R.320 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D Salt bridges: C:K.327, C:R.333, D:R.320 SO4.26: 5 residues within 4Å: Chain C: K.449, T.546, Y.623, S.624, S.625 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.625 SO4.34: 5 residues within 4Å: Chain D: K.449, T.546, Y.623, S.624, S.625 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.624, D:S.625

32 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: K.351, P.352, K.353 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: N.391, P.392, D.393, K.405 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: A.425, R.426, W.443 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: W.443, N.444, G.445 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: R.324, N.328 Ligand excluded by PLIP CL.9: 1 residues within 4Å: Chain A: N.471 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: K.315, V.316 Chain C: A.313 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: K.433, R.478 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain A: Y.488, R.697 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain A: E.561, L.562, L.566 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain A: Y.380, P.381, N.382 Ligand excluded by PLIP CL.16: 6 residues within 4Å: Chain B: Q.318, F.319, T.322 Chain D: Q.318, F.319, T.322 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain B: K.351, P.352, K.353 Ligand excluded by PLIP CL.18: 3 residues within 4Å: Chain B: N.391, P.392, D.393 Ligand excluded by PLIP CL.19: 3 residues within 4Å: Chain B: E.561, L.562, L.566 Ligand excluded by PLIP CL.20: 1 residues within 4Å: Chain B: R.582 Ligand excluded by PLIP CL.21: 4 residues within 4Å: Chain B: N.395, V.396, V.397, K.403 Ligand excluded by PLIP CL.22: 3 residues within 4Å: Chain B: W.443, N.444, G.445 Ligand excluded by PLIP CL.23: 2 residues within 4Å: Chain B: Y.380, N.382 Ligand excluded by PLIP CL.27: 3 residues within 4Å: Chain C: K.351, P.352, K.353 Ligand excluded by PLIP CL.28: 4 residues within 4Å: Chain C: N.391, P.392, D.393, K.405 Ligand excluded by PLIP CL.29: 3 residues within 4Å: Chain C: R.324, N.328, N.335 Ligand excluded by PLIP CL.30: 2 residues within 4Å: Chain C: K.433, R.478 Ligand excluded by PLIP CL.31: 2 residues within 4Å: Chain C: Y.488, R.697 Ligand excluded by PLIP CL.32: 1 residues within 4Å: Chain C: V.316 Ligand excluded by PLIP CL.33: 4 residues within 4Å: Chain C: W.443, N.444, G.445, L.451 Ligand excluded by PLIP CL.35: 3 residues within 4Å: Chain D: K.351, P.352, K.353 Ligand excluded by PLIP CL.36: 3 residues within 4Å: Chain D: N.391, P.392, D.393 Ligand excluded by PLIP CL.37: 1 residues within 4Å: Chain D: R.582 Ligand excluded by PLIP CL.38: 3 residues within 4Å: Chain D: W.443, N.444, G.445 Ligand excluded by PLIP CL.39: 1 residues within 4Å: Chain D: R.470 Ligand excluded by PLIP CL.40: 3 residues within 4Å: Chain D: Y.380, P.381, N.382 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lovering, A.L. et al., Structure of the bacterial teichoic acid polymerase TagF provides insights into membrane association and catalysis. Nat.Struct.Mol.Biol. (2010)

Release Date

2010-04-28

Peptides

Teichoic acid biosynthesis protein F: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Teichoic acid biosynthesis protein F

Related Entries With Identical Sequence