SMTL ID : 3l7k.2 (2 other biounits)

Structure of the Wall Teichoic Acid Polymerase TagF, H444N + CDPG (15 minute soak)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.320, R.324 Chain B: K.327, R.333 Ligands: EDT.10 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.324 Salt bridges: A:R.320, B:K.327, B:R.333 SO4.2: 5 residues within 4Å: Chain A: K.327, R.333 Chain B: R.320, R.324 Ligands: EDT.10 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Salt bridges: A:K.327, A:R.333, B:R.320 Hydrogen bonds: B:R.324 SO4.3: 3 residues within 4Å: Chain A: T.546, S.624, S.625 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.625 SO4.14: 3 residues within 4Å: Chain B: T.546, S.624, S.625 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.625 Salt bridges: B:K.449

15 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: N.391, P.392, D.393 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: N.471 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: K.315, V.316 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: K.433, R.478 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: Y.488, R.697 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: E.561, L.562, L.591 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain A: R.406 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain A: W.443, N.444, G.445 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain A: K.351, P.352, K.353 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain B: Q.318, F.319, T.322 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain B: K.351, P.352, K.353 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain B: N.391, P.392, D.393 Ligand excluded by PLIP CL.18: 3 residues within 4Å: Chain B: E.561, L.562, L.566 Ligand excluded by PLIP CL.19: 3 residues within 4Å: Chain B: V.396, V.397, K.403 Ligand excluded by PLIP CL.20: 3 residues within 4Å: Chain B: W.443, N.444, G.445 Ligand excluded by PLIP

1 x EDT: {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID(Non-covalent)

EDT.10: 7 residues within 4Å: Chain A: L.323, R.324, K.327 Chain B: R.324, K.327 Ligands: SO4.1, SO4.2 8 PLIP interactions: 2 interactions with chain B, 6 interactions with chain A Salt bridges: B:R.324, B:K.327, A:R.324, A:R.324, A:K.327, A:K.327, A:K.327 Hydrogen bonds: A:K.327

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lovering, A.L. et al., Structure of the bacterial teichoic acid polymerase TagF provides insights into membrane association and catalysis. Nat.Struct.Mol.Biol. (2010)

Release Date

2010-04-28

Peptides

Teichoic acid biosynthesis protein F: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Teichoic acid biosynthesis protein F

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