SMTL ID : 3l7k.1 (2 other biounits)

Structure of the Wall Teichoic Acid Polymerase TagF, H444N + CDPG (15 minute soak)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-tetramer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.320, R.324 Chain B: K.327, R.333 Ligands: EDT.10 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.324 Salt bridges: A:R.320, B:K.327, B:R.333 SO4.2: 5 residues within 4Å: Chain A: K.327, R.333 Chain B: R.320, R.324 Ligands: EDT.10 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.324 Salt bridges: B:R.320, A:K.327, A:R.333 SO4.3: 3 residues within 4Å: Chain A: T.546, S.624, S.625 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.625 SO4.14: 3 residues within 4Å: Chain B: T.546, S.624, S.625 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.625 Salt bridges: B:K.449 SO4.21: 4 residues within 4Å: Chain C: K.327, R.333 Chain D: R.320 Ligands: EDT.32 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain D Salt bridges: C:K.327, C:R.333, D:R.320 SO4.28: 4 residues within 4Å: Chain C: R.320 Chain D: K.327, R.333 Ligands: EDT.32 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:R.324 Salt bridges: C:R.320, D:K.327, D:R.333

22 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: N.391, P.392, D.393 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: N.471 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: K.315, V.316 Chain C: A.313 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: K.433, R.478 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: Y.488, R.697 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: E.561, L.562, L.591 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain A: R.406 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain A: W.443, N.444, G.445 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain A: K.351, P.352, K.353 Ligand excluded by PLIP CL.15: 6 residues within 4Å: Chain B: Q.318, F.319, T.322 Chain D: Q.318, F.319, T.322 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain B: K.351, P.352, K.353 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain B: N.391, P.392, D.393 Ligand excluded by PLIP CL.18: 3 residues within 4Å: Chain B: E.561, L.562, L.566 Ligand excluded by PLIP CL.19: 3 residues within 4Å: Chain B: V.396, V.397, K.403 Ligand excluded by PLIP CL.20: 3 residues within 4Å: Chain B: W.443, N.444, G.445 Ligand excluded by PLIP CL.22: 3 residues within 4Å: Chain C: K.351, P.352, K.353 Ligand excluded by PLIP CL.23: 3 residues within 4Å: Chain C: N.391, P.392, D.393 Ligand excluded by PLIP CL.24: 3 residues within 4Å: Chain C: R.324, N.328, N.335 Ligand excluded by PLIP CL.25: 2 residues within 4Å: Chain C: K.433, R.478 Ligand excluded by PLIP CL.26: 1 residues within 4Å: Chain C: R.697 Ligand excluded by PLIP CL.29: 3 residues within 4Å: Chain D: K.351, P.352, K.353 Ligand excluded by PLIP CL.30: 3 residues within 4Å: Chain D: N.391, P.392, D.393 Ligand excluded by PLIP

2 x EDT: {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID(Non-covalent)

EDT.10: 7 residues within 4Å: Chain A: L.323, R.324, K.327 Chain B: R.324, K.327 Ligands: SO4.1, SO4.2 8 PLIP interactions: 2 interactions with chain B, 6 interactions with chain A Salt bridges: B:R.324, B:K.327, A:R.324, A:R.324, A:K.327, A:K.327, A:K.327 Hydrogen bonds: A:K.327 EDT.32: 7 residues within 4Å: Chain C: R.320, R.324, K.327 Chain D: R.324, K.327 Ligands: SO4.21, SO4.28 10 PLIP interactions: 6 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:K.327, D:K.327 Salt bridges: C:R.324, C:R.324, C:K.327, C:K.327, C:K.327, D:R.324, D:K.327, D:K.327

1 x C2G: [CYTIDINE-5'-PHOSPHATE] GLYCERYLPHOSPHORIC ACID ESTER(Non-covalent)

C2G.27: 18 residues within 4Å: Chain D: W.443, N.444, G.445, T.446, P.447, R.511, A.544, P.545, T.546, W.547, R.582, M.583, H.584, V.609, S.624, S.625, V.626, D.629 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:V.626 Hydrogen bonds: D:W.443, D:N.444, D:G.445, D:T.546, D:R.582, D:R.582, D:S.624, D:S.625, D:D.629 Salt bridges: D:H.584, D:H.584 pi-Cation interactions: D:H.584

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.31: 4 residues within 4Å: Chain D: R.426, W.443, Y.468, F.472 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:R.426, D:R.426, D:Y.468

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lovering, A.L. et al., Structure of the bacterial teichoic acid polymerase TagF provides insights into membrane association and catalysis. Nat.Struct.Mol.Biol. (2010)

Release Date

2010-04-28

Peptides

Teichoic acid biosynthesis protein F: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Teichoic acid biosynthesis protein F

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