SMTL ID : 3l7k.3 (2 other biounits)

Structure of the Wall Teichoic Acid Polymerase TagF, H444N + CDPG (15 minute soak)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.327, R.333 Chain B: R.320 Ligands: EDT.12 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Salt bridges: B:R.320, A:K.327, A:R.333 SO4.8: 4 residues within 4Å: Chain A: R.320 Chain B: K.327, R.333 Ligands: EDT.12 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Salt bridges: B:K.327, B:R.333, A:R.320 Hydrogen bonds: A:R.324

7 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: K.351, P.352, K.353 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: N.391, P.392, D.393 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: R.324, N.328, N.335 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: K.433, R.478 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain A: R.697 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain B: K.351, P.352, K.353 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain B: N.391, P.392, D.393 Ligand excluded by PLIP

1 x C2G: [CYTIDINE-5'-PHOSPHATE] GLYCERYLPHOSPHORIC ACID ESTER(Non-covalent)

C2G.7: 18 residues within 4Å: Chain B: W.443, N.444, G.445, T.446, P.447, R.511, A.544, P.545, T.546, W.547, R.582, M.583, H.584, V.609, S.624, S.625, V.626, D.629 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:V.626 Hydrogen bonds: B:W.443, B:N.444, B:G.445, B:T.546, B:R.582, B:R.582, B:S.624, B:S.625, B:D.629 Salt bridges: B:H.584, B:H.584 pi-Cation interactions: B:H.584

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.11: 4 residues within 4Å: Chain B: R.426, W.443, Y.468, F.472 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.426, B:R.426, B:Y.468

1 x EDT: {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID(Non-covalent)

EDT.12: 7 residues within 4Å: Chain A: R.320, R.324, K.327 Chain B: R.324, K.327 Ligands: SO4.1, SO4.8 10 PLIP interactions: 6 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:K.327, B:K.327 Salt bridges: A:R.324, A:R.324, A:K.327, A:K.327, A:K.327, B:R.324, B:K.327, B:K.327

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lovering, A.L. et al., Structure of the bacterial teichoic acid polymerase TagF provides insights into membrane association and catalysis. Nat.Struct.Mol.Biol. (2010)

Release Date

2010-04-28

Peptides

Teichoic acid biosynthesis protein F: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Teichoic acid biosynthesis protein F

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