SMTL ID : 3m36.1

Factor XA in complex with the inhibitor 1-[3-(aminomethyl)phenyl]-N-[3-fluoro-2'-(methylsulfonyl)biphenyl-4-yl]-3-(trifluoromethyl)-1H-pyrazole-5-carboxamide (DPC423)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-1-1-mer

Ligands

1 x M35: 1-[3-(aminomethyl)phenyl]-N-[3-fluoro-2'-(methylsulfonyl)biphenyl-4-yl]-3-(trifluoromethyl)-1H-pyrazole-5-carboxamide(Non-covalent)

M35.1: 18 residues within 4Å: Chain A: K.82, E.83, T.84, Y.85, R.132, E.135, F.162, D.179, A.180, C.181, Q.182, S.185, V.203, W.205, G.206, G.208, C.209, G.216 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.162, A:F.162, A:V.203, A:W.205 Hydrogen bonds: A:Q.182, A:G.206, A:G.208 Water bridges: A:G.206, A:G.208 pi-Stacking: A:Y.85, A:F.162, A:W.205 Halogen bonds: A:E.135

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 7 residues within 4Å: Chain A: D.56, N.58, T.59, Q.61, E.62, E.63, E.66 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pruitt, J.R. et al., Discovery of 1-(2-Aminomethylphenyl)-3-trifluoromethyl-N-[3-fluoro-2'-(aminosulfonyl)[1,1'-biphenyl)]-1H-pyrazole-5-carboxyamide (DPC602), a Potent, Selective, and Orally Bioavailable Factor Xa Inhibitor. J.Med.Chem. (2003)

Release Date

2010-04-21

Peptides

Coagulation factor X: A
Coagulation factor X: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

Coagulation factor X

Coagulation factor X

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