- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- hetero-1-1-1-1-mer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 1 x CU: COPPER (II) ION(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
CA.4: 5 residues within 4Å:- Chain A: R.57, E.122
- Chain B: S.102
- Ligands: HEM.1, HEM.2
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Metal complexes: B:S.102, A:E.122
CA.5: 4 residues within 4Å:- Chain A: A.124, L.126, D.131, N.179
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:A.124, A:L.126, A:D.131, A:D.131
- 1 x PEO: HYDROGEN PEROXIDE(Non-functional Binders)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 3 x HEC: HEME C(Covalent)
HEC.8: 26 residues within 4Å:- Chain A: L.39, F.53, L.427
- Chain B: E.63, C.65, C.68, H.69, T.105, G.106, P.107, L.109, V.112, Y.116, W.120, H.121, H.124, L.125, P.128, V.132, S.135, K.136, M.137, P.138, Y.140, M.188
- Chain C: I.145
17 PLIP interactions:14 interactions with chain B, 3 interactions with chain A,- Hydrophobic interactions: B:E.63, B:T.105, B:P.107, B:L.109, B:W.120, B:L.125, B:V.132, B:M.137, B:Y.140, A:L.39, A:F.53, A:L.427
- Hydrogen bonds: B:Y.116, B:S.135
- Salt bridges: B:H.124
- pi-Stacking: B:H.124
- Metal complexes: B:H.69
HEC.10: 27 residues within 4Å:- Chain C: R.166, A.184, A.185, M.186, P.187, W.189, V.205, T.232, C.233, C.236, H.237, L.247, G.248, A.249, P.250, L.252, W.258, I.259, Y.260, G.261, L.267, T.270, I.271, R.275, N.276, G.277
- Ligands: HEC.11
18 PLIP interactions:18 interactions with chain C,- Hydrophobic interactions: C:A.184, C:W.189, C:W.189, C:V.205, C:L.252, C:L.252, C:W.258, C:Y.260, C:L.267, C:T.270, C:I.271, C:R.275
- Hydrogen bonds: C:I.259, C:Y.260, C:G.277
- Salt bridges: C:R.166, C:R.166
- Metal complexes: C:H.237
HEC.11: 27 residues within 4Å:- Chain B: Y.116, S.117
- Chain C: Y.142, C.143, C.146, H.147, G.156, F.157, P.158, L.160, W.165, R.166, W.167, G.168, I.174, S.177, I.178, A.184, I.259, Y.260, G.277, Q.278, M.279, P.280, Q.282, L.286
- Ligands: HEC.10
15 PLIP interactions:14 interactions with chain C, 1 interactions with chain B,- Hydrophobic interactions: C:P.158, C:L.160, C:L.160, C:I.174, C:I.178, C:I.178, C:P.280, C:Q.282, C:L.286, B:Y.116
- Hydrogen bonds: C:R.166, C:W.167, C:W.167
- Salt bridges: C:R.166
- Metal complexes: C:H.147
- 1 x FC6: HEXACYANOFERRATE(3-)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Buschmann, S. et al., The Structure of cbb3 Cytochrome Oxidase Provides Insights into Proton Pumping. Science (2010)
- Release Date
- 2010-08-04
- Peptides
- Cytochrome c oxidase, cbb3-type, subunit N: A
Cytochrome c oxidase, cbb3-type, subunit O: B
Cytochrome c oxidase, cbb3-type, subunit P: C
30-mer peptide: D - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
HC
ID
Y - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- hetero-1-1-1-1-mer
- Ligands
- 2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 1 x CU: COPPER (II) ION(Non-covalent)
- 2 x CA: CALCIUM ION(Non-covalent)
- 1 x PEO: HYDROGEN PEROXIDE(Non-functional Binders)
- 1 x PO4: PHOSPHATE ION(Non-functional Binders)
- 3 x HEC: HEME C(Covalent)
- 1 x FC6: HEXACYANOFERRATE(3-)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Buschmann, S. et al., The Structure of cbb3 Cytochrome Oxidase Provides Insights into Proton Pumping. Science (2010)
- Release Date
- 2010-08-04
- Peptides
- Cytochrome c oxidase, cbb3-type, subunit N: A
Cytochrome c oxidase, cbb3-type, subunit O: B
Cytochrome c oxidase, cbb3-type, subunit P: C
30-mer peptide: D - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
GB
HC
ID
Y - Membrane
-
We predict this structure to be a membrane protein.