SMTL ID : 3nls.1

Crystal Structure of HIV-1 Protease in Complex with KNI-10772

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: Q.18, M.36, S.37 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.18, A:Q.18, A:S.37

1 x URE: UREA(Non-functional Binders)

URE.2: 2 residues within 4Å: Chain A: K.7, R.8 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Water bridges: B:R.87, A:R.8 Hydrogen bonds: A:R.8

1 x 016: (4R)-3-[(2R,3S)-3-{[(2,6-DIMETHYLPHENOXY)ACETYL]AMINO}-2-HYDROXY-4-PHENYLBUTANOYL]-N-[(1S,2R)-2-HYDROXY-2,3-DIHYDRO-1H-INDEN-1-YL]-5,5-DIMETHYL-1,3-THIAZOLIDINE-4-CARBOXAMIDE(Non-covalent)

016.3: 28 residues within 4Å: Chain A: R.8, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 23 PLIP interactions: 11 interactions with chain A, 12 interactions with chain B Hydrophobic interactions: A:A.28, A:V.32, A:I.47, A:P.81, A:V.82, A:I.84, A:I.84, B:L.23, B:A.28, B:D.29, B:D.30, B:V.32, B:I.47, B:I.50, B:V.82 Hydrogen bonds: A:G.27, A:G.27, A:D.29, B:G.27, B:G.27, B:D.29 Water bridges: A:I.50, B:I.50

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 2 residues within 4Å: Chain B: K.7, R.8 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kawasaki, Y. et al., Crystal Structure of HIV-1 Protease in Complex with KNI-10772. To be Published

Release Date

2011-09-07

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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