SMTL ID : 3th9.1

Crystal Structure of HIV-1 Protease Mutant Q7K V32I L63I with a cyclic sulfonamide inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.34 Å

Oligo State

homo-dimer

Ligands

2 x 9Y9: tert-butyl {(2S,3R)-4-[(4S)-7-fluoro-4-methyl-1,1-dioxido-4,5-dihydro-1,2-benzothiazepin-2(3H)-yl]-3-hydroxy-1-phenylbutan-2-yl}carbamate(Non-covalent)

9Y9.1: 22 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, I.50, P.81, V.82, I.84 Chain B: D.25, G.27, A.28, V.32, G.48, G.49, I.50, V.82, I.84 Ligands: 9Y9.2 15 PLIP interactions: 8 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:A.28, A:V.32, A:P.81, A:V.82, A:I.84, B:A.28, B:V.32, B:V.82, B:I.84 Water bridges: A:I.50, B:I.50 Salt bridges: A:D.25, B:D.25 Halogen bonds: A:D.30 Hydrogen bonds: B:G.27 9Y9.2: 23 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, V.32, G.48, G.49, I.50, V.82, I.84 Chain B: D.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, I.50, P.81, V.82, I.84 Ligands: 9Y9.1 21 PLIP interactions: 11 interactions with chain B, 10 interactions with chain A Hydrophobic interactions: B:A.28, B:V.32, B:I.50, B:I.50, B:P.81, B:P.81, B:V.82, B:I.84, A:L.23, A:V.32, A:I.50, A:V.82, A:I.84 Hydrogen bonds: B:I.50, A:G.27, A:G.27 Salt bridges: B:D.25, A:D.25 Halogen bonds: B:D.30 Water bridges: A:I.50, A:I.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ganguly, A.K. et al., Design, Synthesis, and X-ray Crystallographic Analysis of a Novel Class of HIV-1 Protease Inhibitors. J.Med.Chem. (2011)

Release Date

2011-09-28

Peptides

Gag-Pol polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Gag-Pol polyprotein

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