SMTL ID : 3p76.1

X-ray crystal structure of Aquifex aeolicus LpxC complexed SCH1379777

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.1: 3 residues within 4Å: Chain A: F.40, Y.45, T.88 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.45 pi-Stacking: A:H.29, A:F.40

1 x P76: N-[(1S,2R)-2-hydroxy-1-(hydroxycarbamoyl)propyl]-4-[4-(phenylethynyl)phenyl]piperidine-1-carboxamide(Non-covalent)

P76.2: 20 residues within 4Å: Chain A: I.18, H.58, E.73, H.74, T.179, F.180, I.186, I.189, K.190, G.195, G.198, S.199, L.200, T.203, Y.212, H.226, K.227, D.230, H.253 Ligands: ZN.3 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.18, A:F.180, A:I.186, A:I.189, A:L.200, A:T.203, A:Y.212 Hydrogen bonds: A:H.58, A:T.179, A:T.179, A:K.227 Water bridges: A:T.179, A:K.227, A:K.227, A:H.253, A:H.253

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.74, H.226, D.230 Ligands: P76.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.74, A:H.226, A:D.230, A:D.230 ZN.4: 2 residues within 4Å: Chain A: H.58, H.188 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.58, A:H.188, H2O.6, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Faruk Mansoor, U. et al., Design and synthesis of potent Gram-negative specific LpxC inhibitors. Bioorg.Med.Chem.Lett. (2011)

Release Date

2011-02-09

Peptides

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

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