SMTL ID : 3p7b.1

p38 inhibitor-bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x P7B: 1-{5-tert-butyl-3-[(5-oxo-1,4-diazepan-1-yl)carbonyl]thiophen-2-yl}-3-naphthalen-1-ylurea(Non-covalent)

P7B.1: 18 residues within 4Å: Chain A: V.44, A.57, K.59, R.73, R.76, E.77, L.80, L.81, M.84, V.89, I.90, L.110, T.112, H.154, I.172, L.173, D.174, F.175 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.44, A:K.59, A:K.59, A:R.73, A:L.80, A:L.81, A:V.89, A:I.90, A:L.110, A:T.112, A:I.172, A:D.174 Hydrogen bonds: A:K.59, A:R.76, A:E.77, A:E.77, A:D.174 pi-Stacking: A:F.175

1 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.2: 13 residues within 4Å: Chain A: E.198, L.201, W.203, H.205, Y.206, N.207, L.242, K.255, I.265, L.297, D.298, S.299, D.300 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.201, A:W.203, A:L.242, A:I.265 Hydrogen bonds: A:Y.206, A:D.298, A:S.299, A:D.300 Water bridges: A:N.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moffett, K. et al., Discovery of a novel class of non-ATP site DFG-out state p38 inhibitors utilizing computationally assisted virtual fragment-based drug design (vFBDD). Bioorg.Med.Chem.Lett. (2011)

Release Date

2011-10-12

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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