SMTL ID : 3p88.2 (2 other biounits)

FXR bound to isoquinolinecarboxylic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

hetero-12-12-mer

Ligands

12 x P88: 7-(4-{[3-(2,6-dimethylphenyl)-5-(1-methylethyl)isoxazol-4-yl]methoxy}phenyl)isoquinoline-3-carboxylic acid(Non-covalent)

P88.1: 19 residues within 4Å: Chain A: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, S.99, Y.126, H.204, W.211, F.218, W.226 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:T.27, A:F.41, A:L.44, A:L.44, A:M.47, A:M.85, A:F.86, A:I.92, A:F.218, A:W.226, A:W.226 Water bridges: A:M.22 Salt bridges: A:R.88 P88.3: 19 residues within 4Å: Chain C: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, S.99, Y.126, H.204, W.211, F.218, W.226 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:T.27, C:F.41, C:L.44, C:L.44, C:M.47, C:M.85, C:F.86, C:I.92, C:F.218, C:W.226, C:W.226 Water bridges: C:M.22 Salt bridges: C:R.88 P88.5: 19 residues within 4Å: Chain E: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, S.99, Y.126, H.204, W.211, F.218, W.226 13 PLIP interactions: 13 interactions with chain E Hydrophobic interactions: E:T.27, E:F.41, E:L.44, E:L.44, E:M.47, E:M.85, E:F.86, E:I.92, E:F.218, E:W.226, E:W.226 Water bridges: E:M.22 Salt bridges: E:R.88 P88.7: 19 residues within 4Å: Chain G: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, S.99, Y.126, H.204, W.211, F.218, W.226 13 PLIP interactions: 13 interactions with chain G Hydrophobic interactions: G:T.27, G:F.41, G:L.44, G:L.44, G:M.47, G:M.85, G:F.86, G:I.92, G:F.218, G:W.226, G:W.226 Water bridges: G:M.22 Salt bridges: G:R.88 P88.9: 19 residues within 4Å: Chain I: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, S.99, Y.126, H.204, W.211, F.218, W.226 13 PLIP interactions: 13 interactions with chain I Hydrophobic interactions: I:T.27, I:F.41, I:L.44, I:L.44, I:M.47, I:M.85, I:F.86, I:I.92, I:F.218, I:W.226, I:W.226 Water bridges: I:M.22 Salt bridges: I:R.88 P88.11: 19 residues within 4Å: Chain K: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, S.99, Y.126, H.204, W.211, F.218, W.226 13 PLIP interactions: 13 interactions with chain K Hydrophobic interactions: K:T.27, K:F.41, K:L.44, K:L.44, K:M.47, K:M.85, K:F.86, K:I.92, K:F.218, K:W.226, K:W.226 Water bridges: K:M.22 Salt bridges: K:R.88 P88.13: 19 residues within 4Å: Chain M: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, S.99, Y.126, H.204, W.211, F.218, W.226 13 PLIP interactions: 13 interactions with chain M Hydrophobic interactions: M:T.27, M:F.41, M:L.44, M:L.44, M:M.47, M:M.85, M:F.86, M:I.92, M:F.218, M:W.226, M:W.226 Water bridges: M:M.22 Salt bridges: M:R.88 P88.15: 19 residues within 4Å: Chain O: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, S.99, Y.126, H.204, W.211, F.218, W.226 13 PLIP interactions: 13 interactions with chain O Hydrophobic interactions: O:T.27, O:F.41, O:L.44, O:L.44, O:M.47, O:M.85, O:F.86, O:I.92, O:F.218, O:W.226, O:W.226 Water bridges: O:M.22 Salt bridges: O:R.88 P88.17: 19 residues within 4Å: Chain Q: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, S.99, Y.126, H.204, W.211, F.218, W.226 13 PLIP interactions: 13 interactions with chain Q Hydrophobic interactions: Q:T.27, Q:F.41, Q:L.44, Q:L.44, Q:M.47, Q:M.85, Q:F.86, Q:I.92, Q:F.218, Q:W.226, Q:W.226 Water bridges: Q:M.22 Salt bridges: Q:R.88 P88.19: 19 residues within 4Å: Chain S: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, S.99, Y.126, H.204, W.211, F.218, W.226 13 PLIP interactions: 13 interactions with chain S Hydrophobic interactions: S:T.27, S:F.41, S:L.44, S:L.44, S:M.47, S:M.85, S:F.86, S:I.92, S:F.218, S:W.226, S:W.226 Water bridges: S:M.22 Salt bridges: S:R.88 P88.21: 19 residues within 4Å: Chain U: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, S.99, Y.126, H.204, W.211, F.218, W.226 13 PLIP interactions: 13 interactions with chain U Hydrophobic interactions: U:T.27, U:F.41, U:L.44, U:L.44, U:M.47, U:M.85, U:F.86, U:I.92, U:F.218, U:W.226, U:W.226 Water bridges: U:M.22 Salt bridges: U:R.88 P88.23: 19 residues within 4Å: Chain W: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, S.99, Y.126, H.204, W.211, F.218, W.226 13 PLIP interactions: 13 interactions with chain W Hydrophobic interactions: W:T.27, W:F.41, W:L.44, W:L.44, W:M.47, W:M.85, W:F.86, W:I.92, W:F.218, W:W.226, W:W.226 Water bridges: W:M.22 Salt bridges: W:R.88

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: S.36, A.37, N.111 Chain Q: N.28, K.32 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain Q Hydrogen bonds: A:A.37, A:N.111, Q:N.28 Salt bridges: Q:K.32 SO4.4: 5 residues within 4Å: Chain C: S.36, A.37, N.111 Chain S: N.28, K.32 4 PLIP interactions: 2 interactions with chain S, 2 interactions with chain C Hydrogen bonds: S:N.28, C:A.37, C:N.111 Salt bridges: S:K.32 SO4.6: 5 residues within 4Å: Chain E: S.36, A.37, N.111 Chain I: N.28, K.32 4 PLIP interactions: 2 interactions with chain I, 2 interactions with chain E Hydrogen bonds: I:N.28, E:A.37, E:N.111 Salt bridges: I:K.32 SO4.8: 5 residues within 4Å: Chain G: S.36, A.37, N.111 Chain W: N.28, K.32 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain W Hydrogen bonds: G:A.37, G:N.111, W:N.28 Salt bridges: W:K.32 SO4.10: 5 residues within 4Å: Chain I: S.36, A.37, N.111 Chain M: N.28, K.32 4 PLIP interactions: 2 interactions with chain M, 2 interactions with chain I Hydrogen bonds: M:N.28, I:A.37, I:N.111 Salt bridges: M:K.32 SO4.12: 5 residues within 4Å: Chain C: N.28, K.32 Chain K: S.36, A.37, N.111 4 PLIP interactions: 2 interactions with chain K, 2 interactions with chain C Hydrogen bonds: K:A.37, K:N.111, C:N.28 Salt bridges: C:K.32 SO4.14: 5 residues within 4Å: Chain E: N.28, K.32 Chain M: S.36, A.37, N.111 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain M Hydrogen bonds: E:N.28, M:A.37, M:N.111 Salt bridges: E:K.32 SO4.16: 5 residues within 4Å: Chain G: N.28, K.32 Chain O: S.36, A.37, N.111 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain O Hydrogen bonds: G:N.28, O:A.37, O:N.111 Salt bridges: G:K.32 SO4.18: 5 residues within 4Å: Chain Q: S.36, A.37, N.111 Chain U: N.28, K.32 4 PLIP interactions: 2 interactions with chain U, 2 interactions with chain Q Hydrogen bonds: U:N.28, Q:A.37, Q:N.111 Salt bridges: U:K.32 SO4.20: 5 residues within 4Å: Chain K: N.28, K.32 Chain S: S.36, A.37, N.111 4 PLIP interactions: 2 interactions with chain K, 2 interactions with chain S Hydrogen bonds: K:N.28, S:A.37, S:N.111 Salt bridges: K:K.32 SO4.22: 5 residues within 4Å: Chain A: N.28, K.32 Chain U: S.36, A.37, N.111 4 PLIP interactions: 2 interactions with chain U, 2 interactions with chain A Hydrogen bonds: U:A.37, U:N.111, A:N.28 Salt bridges: A:K.32 SO4.24: 5 residues within 4Å: Chain O: N.28, K.32 Chain W: S.36, A.37, N.111 4 PLIP interactions: 2 interactions with chain W, 2 interactions with chain O Hydrogen bonds: W:A.37, W:N.111, O:N.28 Salt bridges: O:K.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bass, J.Y. et al., Conformationally constrained farnesoid X receptor (FXR) agonists: Heteroaryl replacements of the naphthalene. Bioorg.Med.Chem.Lett. (2011)

Release Date

2011-08-31

Peptides

Farnesoid X receptor: ACEGIKMOQSUW
Nuclear receptor coactivator 1: BDFHJLNPRTVX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

I
A

K
A

M
A

O
A

Q
A

S
A

U
A

W
A

B
B

D
B

F
B

H
B

J
B

L
B

N
B

P
B

R
B

T
B

V
B

X
B

Farnesoid X receptor

Nuclear receptor coactivator 1

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