- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x 89P: 6-(4-{[3-(2,6-dichlorophenyl)-5-(1-methylethyl)isoxazol-4-yl]methoxy}phenyl)quinoline-2-carboxylic acid(Non-covalent)
89P.1: 24 residues within 4Å:- Chain A: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, L.97, S.99, G.100, I.109, I.114, M.122, Y.126, H.204, W.211, F.218, W.226
17 PLIP interactions:17 interactions with chain A- Hydrophobic interactions: A:T.27, A:F.41, A:L.44, A:M.47, A:A.48, A:H.51, A:F.86, A:F.86, A:R.88, A:I.92, A:W.211, A:F.218, A:W.226
- Hydrogen bonds: A:R.88
- Water bridges: A:R.88, A:S.99
- Salt bridges: A:R.88
89P.3: 24 residues within 4Å:- Chain C: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, L.97, S.99, G.100, I.109, I.114, M.122, Y.126, H.204, W.211, F.218, W.226
17 PLIP interactions:17 interactions with chain C- Hydrophobic interactions: C:T.27, C:F.41, C:L.44, C:M.47, C:A.48, C:H.51, C:F.86, C:F.86, C:R.88, C:I.92, C:W.211, C:F.218, C:W.226
- Hydrogen bonds: C:R.88
- Water bridges: C:R.88, C:S.99
- Salt bridges: C:R.88
89P.5: 24 residues within 4Å:- Chain E: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, L.97, S.99, G.100, I.109, I.114, M.122, Y.126, H.204, W.211, F.218, W.226
17 PLIP interactions:17 interactions with chain E- Hydrophobic interactions: E:T.27, E:F.41, E:L.44, E:M.47, E:A.48, E:H.51, E:F.86, E:F.86, E:R.88, E:I.92, E:W.211, E:F.218, E:W.226
- Hydrogen bonds: E:R.88
- Water bridges: E:T.27, E:R.88
- Salt bridges: E:R.88
89P.7: 24 residues within 4Å:- Chain G: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, L.97, S.99, G.100, I.109, I.114, M.122, Y.126, H.204, W.211, F.218, W.226
17 PLIP interactions:17 interactions with chain G- Hydrophobic interactions: G:T.27, G:F.41, G:L.44, G:M.47, G:A.48, G:H.51, G:F.86, G:F.86, G:R.88, G:I.92, G:W.211, G:F.218, G:W.226
- Hydrogen bonds: G:R.88
- Water bridges: G:T.27, G:R.88
- Salt bridges: G:R.88
89P.9: 24 residues within 4Å:- Chain I: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, L.97, S.99, G.100, I.109, I.114, M.122, Y.126, H.204, W.211, F.218, W.226
17 PLIP interactions:17 interactions with chain I- Hydrophobic interactions: I:T.27, I:F.41, I:L.44, I:M.47, I:A.48, I:H.51, I:F.86, I:F.86, I:R.88, I:I.92, I:W.211, I:F.218, I:W.226
- Hydrogen bonds: I:R.88
- Water bridges: I:T.27, I:R.88
- Salt bridges: I:R.88
89P.11: 24 residues within 4Å:- Chain K: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, L.97, S.99, G.100, I.109, I.114, M.122, Y.126, H.204, W.211, F.218, W.226
17 PLIP interactions:17 interactions with chain K- Hydrophobic interactions: K:T.27, K:F.41, K:L.44, K:M.47, K:A.48, K:H.51, K:F.86, K:F.86, K:R.88, K:I.92, K:W.211, K:F.218, K:W.226
- Hydrogen bonds: K:R.88
- Water bridges: K:R.88, K:S.99
- Salt bridges: K:R.88
89P.13: 24 residues within 4Å:- Chain M: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, L.97, S.99, G.100, I.109, I.114, M.122, Y.126, H.204, W.211, F.218, W.226
17 PLIP interactions:17 interactions with chain M- Hydrophobic interactions: M:T.27, M:F.41, M:L.44, M:M.47, M:A.48, M:H.51, M:F.86, M:F.86, M:R.88, M:I.92, M:W.211, M:F.218, M:W.226
- Hydrogen bonds: M:R.88
- Water bridges: M:R.88, M:S.99
- Salt bridges: M:R.88
89P.15: 24 residues within 4Å:- Chain O: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, L.97, S.99, G.100, I.109, I.114, M.122, Y.126, H.204, W.211, F.218, W.226
17 PLIP interactions:17 interactions with chain O- Hydrophobic interactions: O:T.27, O:F.41, O:L.44, O:M.47, O:A.48, O:H.51, O:F.86, O:F.86, O:R.88, O:I.92, O:W.211, O:F.218, O:W.226
- Hydrogen bonds: O:R.88
- Water bridges: O:T.27, O:R.88
- Salt bridges: O:R.88
89P.17: 24 residues within 4Å:- Chain Q: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, L.97, S.99, G.100, I.109, I.114, M.122, Y.126, H.204, W.211, F.218, W.226
17 PLIP interactions:17 interactions with chain Q- Hydrophobic interactions: Q:T.27, Q:F.41, Q:L.44, Q:M.47, Q:A.48, Q:H.51, Q:F.86, Q:F.86, Q:R.88, Q:I.92, Q:W.211, Q:F.218, Q:W.226
- Hydrogen bonds: Q:R.88
- Water bridges: Q:R.88, Q:S.99
- Salt bridges: Q:R.88
89P.19: 24 residues within 4Å:- Chain S: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, L.97, S.99, G.100, I.109, I.114, M.122, Y.126, H.204, W.211, F.218, W.226
17 PLIP interactions:17 interactions with chain S- Hydrophobic interactions: S:T.27, S:F.41, S:L.44, S:M.47, S:A.48, S:H.51, S:F.86, S:F.86, S:R.88, S:I.92, S:W.211, S:F.218, S:W.226
- Hydrogen bonds: S:R.88
- Water bridges: S:T.27, S:R.88
- Salt bridges: S:R.88
89P.21: 24 residues within 4Å:- Chain U: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, L.97, S.99, G.100, I.109, I.114, M.122, Y.126, H.204, W.211, F.218, W.226
17 PLIP interactions:17 interactions with chain U- Hydrophobic interactions: U:T.27, U:F.41, U:L.44, U:M.47, U:A.48, U:H.51, U:F.86, U:F.86, U:R.88, U:I.92, U:W.211, U:F.218, U:W.226
- Hydrogen bonds: U:R.88
- Water bridges: U:R.88, U:S.99
- Salt bridges: U:R.88
89P.23: 24 residues within 4Å:- Chain W: M.22, T.27, F.41, L.44, T.45, M.47, A.48, H.51, M.85, F.86, R.88, S.89, I.92, L.97, S.99, G.100, I.109, I.114, M.122, Y.126, H.204, W.211, F.218, W.226
17 PLIP interactions:17 interactions with chain W- Hydrophobic interactions: W:T.27, W:F.41, W:L.44, W:M.47, W:A.48, W:H.51, W:F.86, W:F.86, W:R.88, W:I.92, W:W.211, W:F.218, W:W.226
- Hydrogen bonds: W:R.88
- Water bridges: W:T.27, W:R.88
- Salt bridges: W:R.88
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 6 residues within 4Å:- Chain A: N.28, K.32
- Chain W: F.35, S.36, A.37, N.111
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain W- Hydrogen bonds: A:N.28, W:A.37, W:N.111, W:N.111
- Salt bridges: A:K.32
SO4.4: 6 residues within 4Å:- Chain C: N.28, K.32
- Chain S: F.35, S.36, A.37, N.111
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain S- Hydrogen bonds: C:N.28, S:A.37, S:N.111, S:N.111
- Salt bridges: C:K.32
SO4.6: 6 residues within 4Å:- Chain E: N.28, K.32
- Chain Q: F.35, S.36, A.37, N.111
5 PLIP interactions:2 interactions with chain E, 3 interactions with chain Q- Hydrogen bonds: E:N.28, Q:A.37, Q:N.111, Q:N.111
- Salt bridges: E:K.32
SO4.8: 6 residues within 4Å:- Chain G: N.28, K.32
- Chain U: F.35, S.36, A.37, N.111
5 PLIP interactions:2 interactions with chain G, 3 interactions with chain U- Hydrogen bonds: G:N.28, U:A.37, U:N.111, U:N.111
- Salt bridges: G:K.32
SO4.10: 6 residues within 4Å:- Chain G: F.35, S.36, A.37, N.111
- Chain I: N.28, K.32
5 PLIP interactions:3 interactions with chain G, 2 interactions with chain I- Hydrogen bonds: G:A.37, G:N.111, G:N.111, I:N.28
- Salt bridges: I:K.32
SO4.12: 6 residues within 4Å:- Chain C: F.35, S.36, A.37, N.111
- Chain K: N.28, K.32
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain K- Hydrogen bonds: C:A.37, C:N.111, C:N.111, K:N.28
- Salt bridges: K:K.32
SO4.14: 6 residues within 4Å:- Chain A: F.35, S.36, A.37, N.111
- Chain M: N.28, K.32
5 PLIP interactions:2 interactions with chain M, 3 interactions with chain A- Hydrogen bonds: M:N.28, A:A.37, A:N.111, A:N.111
- Salt bridges: M:K.32
SO4.16: 6 residues within 4Å:- Chain E: F.35, S.36, A.37, N.111
- Chain O: N.28, K.32
5 PLIP interactions:2 interactions with chain O, 3 interactions with chain E- Hydrogen bonds: O:N.28, E:A.37, E:N.111, E:N.111
- Salt bridges: O:K.32
SO4.18: 6 residues within 4Å:- Chain O: F.35, S.36, A.37, N.111
- Chain Q: N.28, K.32
5 PLIP interactions:3 interactions with chain O, 2 interactions with chain Q- Hydrogen bonds: O:A.37, O:N.111, O:N.111, Q:N.28
- Salt bridges: Q:K.32
SO4.20: 6 residues within 4Å:- Chain K: F.35, S.36, A.37, N.111
- Chain S: N.28, K.32
5 PLIP interactions:3 interactions with chain K, 2 interactions with chain S- Hydrogen bonds: K:A.37, K:N.111, K:N.111, S:N.28
- Salt bridges: S:K.32
SO4.22: 6 residues within 4Å:- Chain I: F.35, S.36, A.37, N.111
- Chain U: N.28, K.32
5 PLIP interactions:3 interactions with chain I, 2 interactions with chain U- Hydrogen bonds: I:A.37, I:N.111, I:N.111, U:N.28
- Salt bridges: U:K.32
SO4.24: 6 residues within 4Å:- Chain M: F.35, S.36, A.37, N.111
- Chain W: N.28, K.32
5 PLIP interactions:3 interactions with chain M, 2 interactions with chain W- Hydrogen bonds: M:A.37, M:N.111, M:N.111, W:N.28
- Salt bridges: W:K.32
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bass, J.Y. et al., Conformationally constrained farnesoid X receptor (FXR) agonists: Heteroaryl replacements of the naphthalene. Bioorg.Med.Chem.Lett. (2011)
- Release Date
- 2011-08-31
- Peptides
- Farnesoid X receptor: ACEGIKMOQSUW
Nuclear receptor coactivator 1: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AI
AK
AM
AO
AQ
AS
AU
AW
AB
BD
BF
BH
BJ
BL
BN
BP
BR
BT
BV
BX
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-12-12-mer
- Ligands
- 12 x 89P: 6-(4-{[3-(2,6-dichlorophenyl)-5-(1-methylethyl)isoxazol-4-yl]methoxy}phenyl)quinoline-2-carboxylic acid(Non-covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bass, J.Y. et al., Conformationally constrained farnesoid X receptor (FXR) agonists: Heteroaryl replacements of the naphthalene. Bioorg.Med.Chem.Lett. (2011)
- Release Date
- 2011-08-31
- Peptides
- Farnesoid X receptor: ACEGIKMOQSUW
Nuclear receptor coactivator 1: BDFHJLNPRTVX - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AG
AI
AK
AM
AO
AQ
AS
AU
AW
AB
BD
BF
BH
BJ
BL
BN
BP
BR
BT
BV
BX
B