- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.25 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x MN: MANGANESE (II) ION(Non-covalent)
- 3 x Y02: (2R,3R,4S,5R,6E)-3,4,5-trihydroxy-2-methoxy-8,8-dimethyl-N-[2-(2,4,6-trimethylphenoxy)ethyl]non-6-enamide(Non-covalent)
Y02.3: 20 residues within 4Å:- Chain A: E.35, G.36, T.94, Y.97, C.105, H.114, D.131, T.133, D.142, T.203, H.205, F.211, H.212, V.216, E.238, M.240, W.255, E.269
- Ligands: MN.1, MN.2
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:T.94, A:Y.97, A:Y.97, A:F.211, A:H.212, A:V.216, A:W.255
- Hydrogen bonds: A:T.133, A:T.203, A:T.203
- Water bridges: A:Q.267
Y02.8: 20 residues within 4Å:- Chain B: E.35, G.36, T.94, Y.97, C.105, H.114, D.131, T.133, D.142, T.203, H.205, F.211, H.212, V.216, E.238, M.240, W.255, E.269
- Ligands: MN.6, MN.7
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:T.94, B:Y.97, B:Y.97, B:F.211, B:H.212, B:V.216, B:W.255
- Hydrogen bonds: B:T.133, B:T.203, B:T.203
- Water bridges: B:Q.267
Y02.13: 20 residues within 4Å:- Chain C: E.35, G.36, T.94, Y.97, C.105, H.114, D.131, T.133, D.142, T.203, H.205, F.211, H.212, V.216, E.238, M.240, W.255, E.269
- Ligands: MN.11, MN.12
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:T.94, C:Y.97, C:Y.97, C:F.211, C:H.212, C:V.216, C:W.255
- Hydrogen bonds: C:T.133, C:T.203, C:T.203
- Water bridges: C:Q.267
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 2 residues within 4Å:- Chain A: R.200
- Chain C: N.20
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain C- Salt bridges: A:R.200
- Hydrogen bonds: C:N.20
- Water bridges: C:N.20
SO4.9: 2 residues within 4Å:- Chain A: N.20
- Chain B: R.200
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:N.20
- Water bridges: A:N.20
- Salt bridges: B:R.200
SO4.14: 2 residues within 4Å:- Chain B: N.20
- Chain C: R.200
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:N.20
- Water bridges: B:N.20
- Salt bridges: C:R.200
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lu, J.P. et al., Inhibition of Mycobacterium tuberculosis Methionine Aminopeptidases by Bengamide Derivatives. Chemmedchem (2011)
- Release Date
- 2011-04-20
- Peptides
- Methionine aminopeptidase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.25 Å
- Oligo State
- homo-trimer
- Ligands
- 6 x MN: MANGANESE (II) ION(Non-covalent)
- 3 x Y02: (2R,3R,4S,5R,6E)-3,4,5-trihydroxy-2-methoxy-8,8-dimethyl-N-[2-(2,4,6-trimethylphenoxy)ethyl]non-6-enamide(Non-covalent)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lu, J.P. et al., Inhibition of Mycobacterium tuberculosis Methionine Aminopeptidases by Bengamide Derivatives. Chemmedchem (2011)
- Release Date
- 2011-04-20
- Peptides
- Methionine aminopeptidase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A