- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x Y10: (E,2R,3R,4S,5R)-N-(2,3-dihydro-1H-inden-2-yl)-2-methoxy-8,8-dimethyl-3,4,5-tris(oxidanyl)non-6-enamide(Non-covalent)
- 6 x NI: NICKEL (II) ION(Non-covalent)
NI.2: 7 residues within 4Å:- Chain A: D.142, H.205, T.236, E.238, E.269
- Ligands: Y10.1, NI.3
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.142, A:H.205, A:E.238, A:E.269
NI.3: 6 residues within 4Å:- Chain A: D.131, D.142, E.238, E.269
- Ligands: Y10.1, NI.2
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.131, A:D.131, A:D.142, A:E.269
NI.7: 7 residues within 4Å:- Chain B: D.142, H.205, T.236, E.238, E.269
- Ligands: Y10.6, NI.8
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.142, B:H.205, B:E.238, B:E.269
NI.8: 6 residues within 4Å:- Chain B: D.131, D.142, E.238, E.269
- Ligands: Y10.6, NI.7
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.131, B:D.131, B:D.142, B:E.269
NI.12: 7 residues within 4Å:- Chain C: D.142, H.205, T.236, E.238, E.269
- Ligands: Y10.11, NI.13
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.142, C:H.205, C:E.238, C:E.269
NI.13: 6 residues within 4Å:- Chain C: D.131, D.142, E.238, E.269
- Ligands: Y10.11, NI.12
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.131, C:D.131, C:D.142, C:E.269
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 2 residues within 4Å:- Chain A: N.20
- Chain C: R.200
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain C- Hydrogen bonds: A:N.20
- Water bridges: A:W.21, C:R.200
- Salt bridges: C:R.200
SO4.10: 2 residues within 4Å:- Chain A: R.200
- Chain B: N.20
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:N.20
- Water bridges: B:W.21, A:R.200
- Salt bridges: A:R.200
SO4.15: 2 residues within 4Å:- Chain B: R.200
- Chain C: N.20
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain B- Hydrogen bonds: C:N.20
- Water bridges: C:W.21, B:R.200
- Salt bridges: B:R.200
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lu, J.P. et al., Inhibition of Mycobacterium tuberculosis Methionine Aminopeptidases by Bengamide Derivatives. Chemmedchem (2011)
- Release Date
- 2011-04-20
- Peptides
- Methionine aminopeptidase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x Y10: (E,2R,3R,4S,5R)-N-(2,3-dihydro-1H-inden-2-yl)-2-methoxy-8,8-dimethyl-3,4,5-tris(oxidanyl)non-6-enamide(Non-covalent)
- 6 x NI: NICKEL (II) ION(Non-covalent)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lu, J.P. et al., Inhibition of Mycobacterium tuberculosis Methionine Aminopeptidases by Bengamide Derivatives. Chemmedchem (2011)
- Release Date
- 2011-04-20
- Peptides
- Methionine aminopeptidase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A