SMTL ID : 3pxf.1

CDK2 in complex with two molecules of 8-anilino-1-naphthalene sulfonate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: K.96, M.99, E.203, R.207, R.208 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.99, A:E.203 Water bridges: A:A.209 EDO.2: 4 residues within 4Å: Chain A: P.6, E.7, D.76, V.77 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.7, A:D.76 Water bridges: A:H.79 EDO.3: 5 residues within 4Å: Chain A: D.218, F.221, R.222, R.225, W.251 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.218, A:R.225, A:R.225 EDO.4: 4 residues within 4Å: Chain A: M.9, E.10, T.80, Y.85 No protein-ligand interaction detected (PLIP) EDO.5: 5 residues within 4Å: Chain A: P.261, P.262, L.263, D.264, R.268 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.262, A:R.268, A:R.268 Water bridges: A:E.265

2 x 2AN: 8-ANILINO-1-NAPHTHALENE SULFONATE(Non-covalent)

2AN.6: 9 residues within 4Å: Chain A: L.45, I.60, K.64, V.77, H.79, L.84, L.86, V.162 Ligands: 2AN.7 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.45, A:I.60, A:L.84, A:L.84, A:L.86, A:V.162 Salt bridges: A:K.64, A:H.79 pi-Stacking: A:H.79 2AN.7: 13 residues within 4Å: Chain A: Y.23, K.41, I.43, L.63, K.64, V.72, L.74, L.86, F.88, A.152, D.153, F.154 Ligands: 2AN.6 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.23, A:Y.23, A:I.43, A:L.63, A:L.63, A:K.64, A:V.72, A:L.74, A:L.86 Hydrogen bonds: A:D.153, A:F.154 Water bridges: A:K.41, A:K.41, A:D.153 Salt bridges: A:K.41 pi-Stacking: A:F.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Betzi, S. et al., Discovery of a Potential Allosteric Ligand Binding Site in CDK2. Acs Chem.Biol. (2011)

Release Date

2011-02-16

Peptides

Cell division protein kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cell division protein kinase 2

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