SMTL ID : 3py0.1

CDK2 in complex with inhibitor SU9516

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: E.16, I.18, K.97 Ligands: SU9.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.16

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: G.21, T.22, Y.23, K.41, D.135, K.137, N.140, D.153 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.22, A:Y.23, A:D.135, A:D.135, A:N.140, A:N.140 Salt bridges: A:K.41, A:K.137

1 x SU9: (3Z)-3-(1H-IMIDAZOL-5-YLMETHYLENE)-5-METHOXY-1H-INDOL-2(3H)-ONE(Non-covalent)

SU9.3: 16 residues within 4Å: Chain A: I.18, V.26, A.39, V.72, F.88, E.89, F.90, L.91, H.92, Q.93, D.94, N.140, L.142, A.152, D.153 Ligands: EDO.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.18, A:A.39, A:V.72, A:F.88, A:L.142, A:L.142, A:A.152 Hydrogen bonds: A:E.89, A:L.91, A:L.91, A:D.94 pi-Stacking: A:F.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Betzi, S. et al., Discovery of a Potential Allosteric Ligand Binding Site in CDK2. Acs Chem.Biol. (2011)

Release Date

2011-02-16

Peptides

Cell division protein kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cell division protein kinase 2

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