- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.79 Å
- Oligo State
- homo-dimer
- Ligands
- 16 x SO4: SULFATE ION(Non-functional Binders)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.9: 7 residues within 4Å:- Chain A: P.72, G.75, R.76, Q.79, A.95, R.96, T.97
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:P.72, A:R.96, A:T.97
- Water bridges: A:G.75
EDO.10: 7 residues within 4Å:- Chain A: T.78, L.82, Q.215, S.242, S.243, Y.244, N.247
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:Q.215, A:S.242, A:S.243, A:Y.244, A:N.247
- Water bridges: A:S.243
EDO.11: 12 residues within 4Å:- Chain A: H.182, P.184, T.185, G.186, R.322, Q.344, N.345, G.346, M.347, F.348, S.349, F.350
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:P.184, A:M.347, A:F.348, A:F.350
- Water bridges: A:C.181
EDO.12: 4 residues within 4Å:- Chain A: W.206, H.235, K.236, E.237
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.236, A:E.237, A:E.237
EDO.23: 7 residues within 4Å:- Chain B: P.72, G.75, R.76, Q.79, A.95, R.96, T.97
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:P.72, B:R.96, B:T.97
- Water bridges: B:G.75
EDO.24: 7 residues within 4Å:- Chain B: T.78, L.82, Q.215, S.242, S.243, Y.244, N.247
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:Q.215, B:S.242, B:S.243, B:Y.244, B:N.247
- Water bridges: B:S.243
EDO.25: 12 residues within 4Å:- Chain B: H.182, P.184, T.185, G.186, R.322, Q.344, N.345, G.346, M.347, F.348, S.349, F.350
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:P.184, B:M.347, B:F.348, B:F.350
- Water bridges: B:C.181
EDO.26: 4 residues within 4Å:- Chain B: W.206, H.235, K.236, E.237
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:H.235, B:K.236, B:E.237, B:E.237
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x 3QP: (E)-N-{2-hydroxy-3-methyl-6-[(phosphonooxy)methyl]benzylidene}-L-aspartic acid(Non-covalent)
3QP.14: 19 residues within 4Å:- Chain A: I.13, L.14, I.33, G.34, G.102, G.103, T.104, W.130, N.183, D.211, Y.214, S.243, S.245, K.246, R.254, R.374
- Chain B: Y.65, R.280, S.284
20 PLIP interactions:15 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:G.34, A:G.103, A:T.104, A:W.130, A:N.183, A:S.243, A:S.243, A:S.245, A:K.246, B:Y.65, B:S.284
- Water bridges: A:R.254, B:Y.65
- Salt bridges: A:K.246, A:R.254, A:R.374, B:R.280
- pi-Stacking: A:W.130, A:W.130
- Hydrophobic interactions: B:Y.65
3QP.28: 19 residues within 4Å:- Chain A: Y.65, R.280, S.284
- Chain B: I.13, L.14, I.33, G.34, G.102, G.103, T.104, W.130, N.183, D.211, Y.214, S.243, S.245, K.246, R.254, R.374
21 PLIP interactions:17 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:G.34, B:G.103, B:T.104, B:T.104, B:W.130, B:N.183, B:Y.214, B:S.243, B:S.243, B:S.245, B:K.246, A:S.284
- Water bridges: B:R.254, A:Y.65
- Salt bridges: B:K.246, B:R.254, B:R.374, A:R.280
- pi-Stacking: B:W.130, B:W.130
- Hydrophobic interactions: A:Y.65
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Griswold, W.R. et al., Crystal Structures of Aspartate Aminotransferase Reconstituted with 1-Deazapyridoxal 5'-Phosphate: Internal Aldimine and Stable l-Aspartate External Aldimine. Biochemistry (2011)
- Release Date
- 2011-06-15
- Peptides
- Aspartate transaminase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.79 Å
- Oligo State
- homo-dimer
- Ligands
- 16 x SO4: SULFATE ION(Non-functional Binders)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x 3QP: (E)-N-{2-hydroxy-3-methyl-6-[(phosphonooxy)methyl]benzylidene}-L-aspartic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Griswold, W.R. et al., Crystal Structures of Aspartate Aminotransferase Reconstituted with 1-Deazapyridoxal 5'-Phosphate: Internal Aldimine and Stable l-Aspartate External Aldimine. Biochemistry (2011)
- Release Date
- 2011-06-15
- Peptides
- Aspartate transaminase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A