SMTL ID : 3qq4.1

Crystal structure of swine major histocompatibility complex class I SLA-1 0401 and identification of 2009 pandemic swine-origin influenza A H1N1 virus cytotoxic T lymphocyte epitope peptides

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ALA- THR- ALA- ALA- ALA- THR- GLU- ALA- TYR: VP35(Non-covalent)

ALA-THR-ALA-ALA-ALA-THR-GLU-ALA-TYR.1: 27 residues within 4Å: Chain A: L.5, Y.7, Y.9, M.45, E.63, N.66, T.70, T.73, Y.74, T.80, Y.84, L.95, S.97, Y.99, R.114, D.116, T.143, K.146, W.147, A.150, E.152, R.155, R.156, Y.159, L.163, S.167, Y.171 36 PLIP interactions: 36 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.74, A:L.95, A:L.95, A:A.150, A:Y.159, A:L.163 Hydrogen bonds: A:Y.7, A:E.63, A:N.66, A:Y.74, A:S.97, A:Y.99, A:R.114, A:R.114, A:T.143, A:E.152, A:E.152, A:R.156, A:Y.159, A:S.167, A:Y.171 Water bridges: A:Y.9, A:E.63, A:E.63, A:N.66, A:T.70, A:T.80, A:A.150, A:R.155, A:R.155, A:R.156, A:R.156 Salt bridges: A:K.146, A:R.155 pi-Stacking: A:W.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, N. et al., Crystal structure of swine major histocompatibility complex class I SLA-1 0401 and identification of 2009 pandemic swine-origin influenza A H1N1 virus cytotoxic T lymphocyte epitope peptides. J.Virol. (2011)

Release Date

2011-12-28

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

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