SMTL ID : 7ema.1

Mooring Stone-Like Arg114 Pulls Diverse Bulged Peptides: First Insight into African Swine Fever Virus-Derived T Cell Epitopes Presented by Swine Major Histocompatibility Complex Class I

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x TYR- SER- SER- ASP- VAL- THR- THR- LEU- VAL: TYR-SER-SER-ASP-VAL-THR-THR-LEU-VAL(Non-covalent)

TYR-SER-SER-ASP-VAL-THR-THR-LEU-VAL.1: 28 residues within 4Å: Chain A: Y.7, Y.9, E.55, Y.59, E.63, K.66, Q.67, T.70, T.73, V.76, G.77, N.80, L.81, Y.84, Y.95, Y.99, R.114, Y.123, T.143, K.146, W.147, V.152, R.155, R.156, Y.159, L.163, S.167, Y.171 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:K.66, A:T.70, A:T.73, A:V.76, A:N.80, A:L.81, A:Y.123, A:T.143, A:L.163, A:L.163 Hydrogen bonds: A:Y.7, A:E.55, A:E.63, A:K.66, A:Q.67, A:N.80, A:Y.84, A:Y.99, A:Y.99, A:R.114, A:T.143, A:R.155, A:R.156, A:R.156, A:Y.159, A:S.167, A:S.167 Water bridges: A:E.63, A:Y.95, A:Y.95, A:R.114 Salt bridges: A:K.146 pi-Stacking: A:Y.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yue, C. et al., Mooring Stone-Like Arg 114 Pulls Diverse Bulged Peptides: First Insight into African Swine Fever Virus-Derived T Cell Epitopes Presented by Swine Major Histocompatibility Complex Class I. J.Virol. (2022)

Release Date

2021-12-08

Peptides

Leucocyte antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Leucocyte antigen

Beta-2-microglobulin

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