SMTL ID : 3qqk.1

CDK2 in complex with inhibitor L4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: M.99, D.100, E.203, R.207 Ligands: EDO.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:M.99, A:D.100, A:E.203, A:E.203 Water bridges: A:D.100 EDO.2: 4 residues within 4Å: Chain A: F.256, E.265, R.268, S.269 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.269 EDO.3: 4 residues within 4Å: Chain A: R.208, A.209, P.212 Ligands: EDO.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.209 EDO.4: 4 residues within 4Å: Chain A: H.68, Q.121, A.124, F.125 No protein-ligand interaction detected (PLIP) EDO.5: 7 residues within 4Å: Chain A: L.227, G.228, T.229, P.230, D.231, V.234, R.253 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.231, A:D.231, A:R.253 Water bridges: A:R.253

1 x X02: [4-amino-2-(prop-2-en-1-ylamino)-1,3-thiazol-5-yl](phenyl)methanone(Non-covalent)

X02.6: 13 residues within 4Å: Chain A: I.18, V.26, A.39, V.72, F.88, E.89, F.90, L.91, Q.93, D.94, L.142, A.152, D.153 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.26, A:D.94, A:D.153 Hydrogen bonds: A:E.89, A:L.91, A:L.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schonbrunn, E. et al., Development of highly potent and selective diaminothiazole inhibitors of cyclin-dependent kinases. J.Med.Chem. (2013)

Release Date

2012-10-31

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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