SMTL ID : 3qrt.1

CDK2 in complex with inhibitor NSK-MC2-55

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: M.99, D.100, E.203, R.207 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:M.99, A:D.100, A:E.203, A:E.203 Water bridges: A:D.100, A:D.100 EDO.2: 5 residues within 4Å: Chain A: F.256, E.265, R.268, S.269, S.272 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.268 Water bridges: A:E.265, A:R.268, A:S.269

1 x X14: (5R)-5-(2-methylbutan-2-yl)-N-(4-sulfamoylbenzyl)-4,5,6,7-tetrahydro-2H-indazole-3-carboxamide(Non-covalent)

X14.3: 16 residues within 4Å: Chain A: I.18, V.26, A.39, V.72, F.88, E.89, F.90, L.91, H.92, Q.93, D.94, K.97, Q.139, N.140, L.142, D.153 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.26, A:A.39, A:V.72, A:F.88, A:F.88, A:N.140, A:D.153 Hydrogen bonds: A:L.91, A:L.91, A:L.91, A:D.94, A:D.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schonbrunn, E. et al., Structure-guided optimization of novel CDK2 inhibitors discovered by high-throughput screening. To be Published

Release Date

2012-08-08

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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