- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 8 x AP5: BIS(ADENOSINE)-5'-PENTAPHOSPHATE(Non-covalent)
AP5.2: 27 residues within 4Å:- Chain A: H.152, P.153, G.154, V.164, Q.168, K.189, G.190, N.191, T.193, G.208, N.209, G.210, L.212, A.213, G.215, G.216, T.217, G.218, D.219, L.221, H.246
- Chain C: A.23, S.25, H.26, K.27, K.60
- Ligands: MG.1
28 PLIP interactions:18 interactions with chain A, 10 interactions with chain C- Hydrogen bonds: A:G.190, A:T.193, A:G.216, A:T.217, A:G.218, A:D.219, A:D.219, C:A.23
- Water bridges: A:E.155, A:E.155, A:K.189, A:K.189, A:K.189, A:N.191, A:N.191, A:T.193, A:T.193, C:K.27, C:K.60
- Salt bridges: A:H.152, A:K.189, C:K.27, C:K.27, C:K.27, C:K.27, C:K.60, C:K.60
- pi-Stacking: C:H.26
AP5.3: 9 residues within 4Å:- Chain A: V.62, Y.82, W.83, K.89, Q.94, L.95, E.96, E.97, Y.99
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:E.96, A:E.97, A:Y.99
- Water bridges: A:R.84
- Salt bridges: A:K.89
- pi-Stacking: A:W.83, A:W.83, A:W.83
AP5.5: 27 residues within 4Å:- Chain B: H.152, P.153, G.154, V.164, Q.168, K.189, G.190, N.191, T.193, G.208, N.209, G.210, L.212, A.213, G.215, G.216, T.217, G.218, D.219, L.221, H.246
- Chain D: A.23, S.25, H.26, K.27, K.60
- Ligands: MG.4
28 PLIP interactions:10 interactions with chain D, 18 interactions with chain B- Hydrogen bonds: D:A.23, B:G.190, B:T.193, B:G.216, B:T.217, B:G.218, B:D.219, B:D.219
- Water bridges: D:K.27, D:K.60, B:E.155, B:E.155, B:K.189, B:K.189, B:K.189, B:N.191, B:N.191, B:T.193, B:T.193
- Salt bridges: D:K.27, D:K.27, D:K.27, D:K.27, D:K.60, D:K.60, B:H.152, B:K.189
- pi-Stacking: D:H.26
AP5.6: 9 residues within 4Å:- Chain B: V.62, Y.82, W.83, K.89, Q.94, L.95, E.96, E.97, Y.99
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:E.96, B:E.97, B:Y.99
- Water bridges: B:R.84
- Salt bridges: B:K.89
- pi-Stacking: B:W.83, B:W.83, B:W.83
AP5.8: 27 residues within 4Å:- Chain B: A.23, S.25, H.26, K.27, K.60
- Chain C: H.152, P.153, G.154, V.164, Q.168, K.189, G.190, N.191, T.193, G.208, N.209, G.210, L.212, A.213, G.215, G.216, T.217, G.218, D.219, L.221, H.246
- Ligands: MG.7
28 PLIP interactions:18 interactions with chain C, 10 interactions with chain B- Hydrogen bonds: C:G.190, C:T.193, C:G.216, C:T.217, C:G.218, C:D.219, C:D.219, B:A.23
- Water bridges: C:E.155, C:E.155, C:K.189, C:K.189, C:K.189, C:N.191, C:N.191, C:T.193, C:T.193, B:K.27, B:K.60
- Salt bridges: C:H.152, C:K.189, B:K.27, B:K.27, B:K.27, B:K.27, B:K.60, B:K.60
- pi-Stacking: B:H.26
AP5.9: 9 residues within 4Å:- Chain C: V.62, Y.82, W.83, K.89, Q.94, L.95, E.96, E.97, Y.99
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:E.96, C:E.97, C:Y.99
- Water bridges: C:R.84
- Salt bridges: C:K.89
- pi-Stacking: C:W.83, C:W.83, C:W.83
AP5.11: 27 residues within 4Å:- Chain A: A.23, S.25, H.26, K.27, K.60
- Chain D: H.152, P.153, G.154, V.164, Q.168, K.189, G.190, N.191, T.193, G.208, N.209, G.210, L.212, A.213, G.215, G.216, T.217, G.218, D.219, L.221, H.246
- Ligands: MG.10
28 PLIP interactions:18 interactions with chain D, 10 interactions with chain A- Hydrogen bonds: D:G.190, D:T.193, D:G.216, D:T.217, D:G.218, D:D.219, D:D.219, A:A.23
- Water bridges: D:E.155, D:E.155, D:K.189, D:K.189, D:K.189, D:N.191, D:N.191, D:T.193, D:T.193, A:K.27, A:K.60
- Salt bridges: D:H.152, D:K.189, A:K.27, A:K.27, A:K.27, A:K.27, A:K.60, A:K.60
- pi-Stacking: A:H.26
AP5.12: 9 residues within 4Å:- Chain D: V.62, Y.82, W.83, K.89, Q.94, L.95, E.96, E.97, Y.99
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:E.96, D:E.97, D:Y.99
- Water bridges: D:R.84
- Salt bridges: D:K.89
- pi-Stacking: D:W.83, D:W.83, D:W.83
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)
- Release Date
- 2011-07-27
- Peptides
- ADP/ATP-dependent NAD(P)H-hydrate dehydratase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 8 x AP5: BIS(ADENOSINE)-5'-PENTAPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)
- Release Date
- 2011-07-27
- Peptides
- ADP/ATP-dependent NAD(P)H-hydrate dehydratase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A