SMTL ID : 3rr7.1

Binary Structure of the large fragment of Taq DNA polymerase bound to an abasic site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 1 residues within 4Å: Chain A: W.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.519, A:Y.519

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: R.295, T.296 Chain B: G.10, C.11 No protein-ligand interaction detected (PLIP) GOL.3: 5 residues within 4Å: Chain A: D.318, Y.319, D.493, E.494 Chain B: C.12 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.493, A:E.494 Water bridges: A:Q.321, A:D.493 GOL.5: 5 residues within 4Å: Chain B: C.11 Chain C: A.3, N.4, G.5, G.6 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Obeid, S. et al., Amino Acid templating mechanisms in selection of nucleotides opposite abasic sites by a family a DNA polymerase. J.Biol.Chem. (2012)

Release Date

2012-02-15

Peptides

DNA polymerase I, thermostable: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase I, thermostable

Related Entries With Identical Sequence