SMTL ID : 3rzn.1

Crystal Structure of Human Glycolipid Transfer Protein complexed with 3-O-sulfo-galactosylceramide containing nervonoyl acyl chain (24:1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

homo-dimer

Ligands

2 x CIS: (15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-ENYL)TETRACOS-15-ENAMIDE(Non-covalent)

CIS.1: 33 residues within 4Å: Chain A: L.4, F.33, F.34, L.37, F.42, I.45, D.48, I.49, G.51, N.52, K.55, L.92, A.93, W.96, G.100, F.103, I.104, F.107, I.124, A.128, L.136, H.140, I.147, F.148, A.155, Y.207 Chain B: V.41, P.44, H.140, I.147, F.148, A.151 Ligands: CIS.2 32 PLIP interactions: 30 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:L.4, A:F.33, A:F.33, A:F.34, A:L.37, A:F.42, A:I.49, A:I.49, A:F.103, A:F.103, A:F.103, A:I.104, A:F.107, A:F.107, A:I.124, A:A.128, A:L.136, A:I.147, A:F.148, A:A.155, B:P.44, B:I.147 Hydrogen bonds: A:D.48, A:D.48, A:N.52, A:L.92 Water bridges: A:N.52, A:N.52, A:K.87, A:K.87, A:A.93 Salt bridges: A:K.55 CIS.2: 33 residues within 4Å: Chain A: V.41, P.44, H.140, I.147, F.148, A.151 Chain B: L.4, F.33, F.34, L.37, F.42, I.45, D.48, I.49, G.51, N.52, K.55, L.92, A.93, W.96, G.100, F.103, I.104, F.107, I.124, A.128, L.136, H.140, I.147, F.148, A.155, Y.207 Ligands: CIS.1 34 PLIP interactions: 32 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:L.4, B:F.33, B:F.33, B:F.34, B:L.37, B:F.42, B:I.49, B:I.49, B:F.103, B:F.103, B:F.103, B:I.104, B:F.107, B:F.107, B:I.124, B:A.128, B:L.136, B:I.147, B:F.148, B:A.155, A:P.44, A:I.147 Hydrogen bonds: B:D.48, B:D.48, B:N.52, B:L.92, B:Y.207 Water bridges: B:D.48, B:N.52, B:N.52, B:K.87, B:K.87, B:A.93 Salt bridges: B:K.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Samygina, V.R. et al., Enhanced selectivity for sulfatide by engineered human glycolipid transfer protein. Structure (2011)

Release Date

2012-02-08

Peptides

Glycolipid transfer protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycolipid transfer protein

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