SMTL ID : 3s0k.1

Crystal Structure of Human Glycolipid Transfer Protein complexed with glucosylceramide containing oleoyl acyl chain (18:1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x 03F: (9Z)-N-[(2S,3R,4E)-1-(beta-D-glucopyranosyloxy)-3-hydroxyoctadec-4-en-2-yl]octadec-9-enamide(Non-covalent)

03F.1: 37 residues within 4Å: Chain A: L.30, F.33, F.34, L.37, V.41, F.42, I.45, D.48, I.49, N.52, K.87, L.92, A.93, W.96, R.99, G.100, F.103, I.104, F.107, L.108, I.124, A.128, Y.132, L.136, H.140, V.144, I.147, F.148, A.151, A.155, P.156, F.161, L.165, I.180, F.183, Y.207, V.209 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:L.30, A:F.33, A:F.33, A:F.34, A:F.34, A:L.37, A:F.42, A:I.45, A:I.45, A:I.49, A:F.103, A:F.103, A:F.103, A:I.104, A:F.107, A:I.124, A:L.136, A:A.151, A:L.165, A:F.183 Hydrogen bonds: A:D.48, A:N.52, A:H.140, A:Y.207 Water bridges: A:D.48, A:N.52, A:N.52

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 4 residues within 4Å: Chain A: H.7, E.25, A.26, H.29 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.7, A:E.25, A:E.25, A:H.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Samygina, V.R. et al., Enhanced selectivity for sulfatide by engineered human glycolipid transfer protein. Structure (2011)

Release Date

2012-02-08

Peptides

Glycolipid transfer protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycolipid transfer protein

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