SMTL ID : 3sra.1

Structure of Pseudomonas aerugionsa PvdQ covalently acylated with myristic acid from PVDIq

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

19 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: A.19 Chain B: P.40 Ligand excluded by PLIP EDO.2: 1 residues within 4Å: Chain A: K.20 Ligand excluded by PLIP EDO.3: 6 residues within 4Å: Chain A: A.42, I.45, V.46, W.125, R.127, I.129 Ligand excluded by PLIP EDO.4: 3 residues within 4Å: Chain A: R.49, E.51, R.136 Ligand excluded by PLIP EDO.5: 3 residues within 4Å: Chain A: Q.80, P.81, E.82 Ligand excluded by PLIP EDO.6: 4 residues within 4Å: Chain A: R.108, R.111, E.112 Chain B: E.546 Ligand excluded by PLIP EDO.7: 5 residues within 4Å: Chain A: A.64, Y.75, R.140, E.144 Chain B: M.30 Ligand excluded by PLIP EDO.8: 4 residues within 4Å: Chain A: E.144, G.145 Chain B: V.70, W.186 Ligand excluded by PLIP EDO.9: 5 residues within 4Å: Chain A: Y.31, R.108, E.112 Chain B: L.542, I.544 Ligand excluded by PLIP EDO.10: 7 residues within 4Å: Chain A: A.83, A.86, F.87, R.139 Chain B: L.153, E.154, T.156 Ligand excluded by PLIP EDO.11: 7 residues within 4Å: Chain B: Y.128, G.129, P.130, L.148, R.149, D.150, L.153 Ligand excluded by PLIP EDO.12: 5 residues within 4Å: Chain B: S.268, N.269, D.270, G.295, R.297 Ligand excluded by PLIP EDO.13: 2 residues within 4Å: Chain B: S.303, R.304 Ligand excluded by PLIP EDO.14: 8 residues within 4Å: Chain B: S.11, A.12, D.13, M.17, L.311, E.312, A.313, T.486 Ligand excluded by PLIP EDO.15: 6 residues within 4Å: Chain B: Q.357, W.358, D.359, D.365, S.366, G.367 Ligand excluded by PLIP EDO.16: 6 residues within 4Å: Chain B: L.364, D.365, R.435, G.437, D.438, A.450 Ligand excluded by PLIP EDO.17: 7 residues within 4Å: Chain B: F.380, A.381, L.383, D.384, G.385, A.386, W.387 Ligand excluded by PLIP EDO.18: 7 residues within 4Å: Chain B: D.455, G.456, A.463, I.464, Q.465, G.477, G.478 Ligand excluded by PLIP EDO.19: 1 residues within 4Å: Chain B: E.546 Ligand excluded by PLIP

1 x MYR: MYRISTIC ACID(Covalent)

MYR.20: 17 residues within 4Å: Chain A: T.138, L.141, L.142 Chain B: S.1, P.22, H.23, F.24, F.32, L.50, L.53, N.57, H.68, T.69, V.70, V.158, W.162, N.269 16 PLIP interactions: 14 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:P.22, B:F.24, B:F.24, B:F.24, B:L.50, B:L.53, B:N.57, B:V.158, B:W.162, B:W.162, B:W.162, A:T.138, A:L.141 Hydrogen bonds: B:V.70, B:N.269 Water bridges: B:S.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Drake, E.J. et al., Structural Characterization and High-Throughput Screening of Inhibitors of PvdQ, an NTN Hydrolase Involved in Pyoverdine Synthesis. Acs Chem.Biol. (2011)

Release Date

2011-09-21

Peptides

Acyl-homoserine lactone acylase PvdQ subunit alpha: A
Acyl-homoserine lactone acylase PvdQ subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Acyl-homoserine lactone acylase PvdQ subunit alpha

Acyl-homoserine lactone acylase PvdQ subunit beta

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