- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- monomer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
HEM.5: 25 residues within 4Å:- Chain A: M.101, G.104, Q.105, D.108, D.112, F.113, A.114, R.255, E.258, Q.259, Y.312, T.344, F.347, R.348, G.350, H.351, V.354, L.376, F.380, L.417, Q.423, L.433, I.436, R.440
- Ligands: 3TR.22
27 PLIP interactions:27 interactions with chain A,- Hydrophobic interactions: A:Q.105, A:Q.105, A:D.108, A:E.258, A:Q.259, A:F.347, A:F.347, A:R.348, A:V.354, A:V.354, A:L.376, A:F.380, A:L.417, A:L.433, A:L.433, A:I.436
- Hydrogen bonds: A:D.112, A:A.114
- Water bridges: A:R.255, A:R.255, A:R.348, A:R.348, A:R.348
- Salt bridges: A:R.348, A:R.348, A:R.440
- Metal complexes: A:H.351
- 1 x CA: CALCIUM ION(Non-covalent)
- 1 x ZN: ZINC ION(Non-covalent)
- 12 x IOD: IODIDE ION(Non-functional Binders)
IOD.8: 6 residues within 4Å:- Chain A: A.44, R.45, W.46, N.341, V.342, W.452
Ligand excluded by PLIPIOD.9: 3 residues within 4Å:- Chain A: N.216, Q.217, F.229
Ligand excluded by PLIPIOD.10: 4 residues within 4Å:- Chain A: E.363, R.397, I.559, T.560
Ligand excluded by PLIPIOD.11: 2 residues within 4Å:- Chain A: N.80, P.145
Ligand excluded by PLIPIOD.12: 1 residues within 4Å:- Chain A: R.96
Ligand excluded by PLIPIOD.13: 2 residues within 4Å:- Chain A: F.309, W.530
Ligand excluded by PLIPIOD.14: 3 residues within 4Å:- Chain A: K.462, T.463, G.466
Ligand excluded by PLIPIOD.15: 4 residues within 4Å:- Chain A: D.311, H.565, A.566, F.567
Ligand excluded by PLIPIOD.16: 3 residues within 4Å:- Chain A: L.224, A.225, R.271
Ligand excluded by PLIPIOD.17: 2 residues within 4Å:- Chain A: E.373, P.375
Ligand excluded by PLIPIOD.18: 2 residues within 4Å:- Chain A: P.236, T.425
Ligand excluded by PLIPIOD.19: 2 residues within 4Å:- Chain A: R.31, Y.331
Ligand excluded by PLIP- 1 x SCN: THIOCYANATE ION(Non-functional Binders)
- 2 x 3TR: 3-AMINO-1,2,4-TRIAZOLE(Non-covalent)
3TR.21: 6 residues within 4Å:- Chain A: S.254, R.255, F.381, P.424
- Ligands: SCN.20, 3TR.22
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.254
- pi-Stacking: A:F.381
3TR.22: 6 residues within 4Å:- Chain A: Q.105, H.109, R.255, E.258
- Ligands: HEM.5, 3TR.21
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.105
- Water bridges: A:R.255, A:R.255
- Salt bridges: A:E.258
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.23: 2 residues within 4Å:- Chain A: H.377, H.429
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.377
EDO.24: 5 residues within 4Å:- Chain A: S.33, A.35, L.36, R.41, R.338
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:S.33, A:S.33
- Water bridges: A:A.35, A:A.35, A:G.37, A:A.42, A:R.338
EDO.25: 4 residues within 4Å:- Chain A: I.24, P.197, A.200, S.201
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:P.197
EDO.26: 4 residues within 4Å:- Chain A: A.219, F.229, V.246, I.387
No protein-ligand interaction detected (PLIP)EDO.27: 6 residues within 4Å:- Chain A: S.359, L.361, P.367, A.372, E.373, K.402
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.402
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.28: 6 residues within 4Å:- Chain A: R.76, N.80, P.149, K.150, R.418, N.419
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.80, A:R.418
GOL.29: 8 residues within 4Å:- Chain A: E.123, S.125, C.129, G.136, D.137, E.138, C.139, F.161
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.125, A:S.125, A:E.138, A:C.139
- 1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pandey, N. et al., Crystal structure of the complex of goat lactoperoxidase with amitrole at 2.1 A resolution. TO BE PUBLISHED
- Release Date
- 2011-08-17
- Peptides
- Lactoperoxidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- monomer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 1 x CA: CALCIUM ION(Non-covalent)
- 1 x ZN: ZINC ION(Non-covalent)
- 12 x IOD: IODIDE ION(Non-functional Binders)
- 1 x SCN: THIOCYANATE ION(Non-functional Binders)
- 2 x 3TR: 3-AMINO-1,2,4-TRIAZOLE(Non-covalent)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pandey, N. et al., Crystal structure of the complex of goat lactoperoxidase with amitrole at 2.1 A resolution. TO BE PUBLISHED
- Release Date
- 2011-08-17
- Peptides
- Lactoperoxidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A