- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.47 Å
- Oligo State
- monomer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
HEM.5: 24 residues within 4Å:- Chain A: M.101, G.104, Q.105, D.108, D.112, F.113, A.114, R.255, E.258, Q.259, T.344, F.347, R.348, G.350, H.351, V.354, L.376, F.380, L.417, Q.423, L.433, I.436, R.440
- Ligands: PEA.26
23 PLIP interactions:23 interactions with chain A,- Hydrophobic interactions: A:Q.105, A:Q.105, A:D.108, A:E.258, A:Q.259, A:F.347, A:F.347, A:R.348, A:V.354, A:V.354, A:L.376, A:F.380, A:L.417, A:L.433, A:L.433, A:I.436
- Hydrogen bonds: A:D.112, A:A.114
- Water bridges: A:R.255
- Salt bridges: A:R.348, A:R.348, A:R.440
- Metal complexes: A:H.351
- 1 x CA: CALCIUM ION(Non-covalent)
- 13 x IOD: IODIDE ION(Non-functional Binders)
IOD.7: 6 residues within 4Å:- Chain A: A.44, R.45, W.46, N.341, V.342, W.452
Ligand excluded by PLIPIOD.8: 3 residues within 4Å:- Chain A: N.216, Q.217, F.229
Ligand excluded by PLIPIOD.9: 4 residues within 4Å:- Chain A: E.363, R.397, T.560, K.561
Ligand excluded by PLIPIOD.10: 2 residues within 4Å:- Chain A: N.80, P.145
Ligand excluded by PLIPIOD.11: 2 residues within 4Å:- Chain A: R.96
- Ligands: NAG.2
Ligand excluded by PLIPIOD.12: 2 residues within 4Å:- Chain A: F.309, W.530
Ligand excluded by PLIPIOD.13: 3 residues within 4Å:- Chain A: K.462, T.463, G.466
Ligand excluded by PLIPIOD.14: 3 residues within 4Å:- Chain A: H.565, A.566, F.567
Ligand excluded by PLIPIOD.15: 2 residues within 4Å:- Chain A: L.224, A.225
Ligand excluded by PLIPIOD.16: 2 residues within 4Å:- Chain A: E.373, P.375
Ligand excluded by PLIPIOD.17: 2 residues within 4Å:- Chain A: P.236, T.425
Ligand excluded by PLIPIOD.18: 1 residues within 4Å:- Chain A: Y.331
Ligand excluded by PLIPIOD.19: 2 residues within 4Å:- Chain A: E.196, P.197
Ligand excluded by PLIP- 1 x SCN: THIOCYANATE ION(Non-functional Binders)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.21: 3 residues within 4Å:- Chain A: H.377, T.378, H.429
No protein-ligand interaction detected (PLIP)EDO.22: 4 residues within 4Å:- Chain A: A.35, L.36, R.41, R.338
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:S.33
- Water bridges: A:A.35, A:A.35, A:G.37, A:R.338, A:R.338
EDO.23: 2 residues within 4Å:- Chain A: I.24, P.197
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:P.197
- Water bridges: A:I.24
EDO.24: 5 residues within 4Å:- Chain A: A.219, F.229, V.246, I.387, K.388
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.245
EDO.25: 6 residues within 4Å:- Chain A: S.359, L.361, P.367, A.372, E.373, K.402
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.359, A:K.402
- 1 x PEA: 2-PHENYLETHYLAMINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kumar, M. et al., Crystal Structure of the Complex of goat Lactoperoxidase with Phenylethylamine at 2.47 A. To be Published
- Release Date
- 2014-01-22
- Peptides
- Lactoperoxidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.47 Å
- Oligo State
- monomer
- Ligands
- 1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 1 x CA: CALCIUM ION(Non-covalent)
- 13 x IOD: IODIDE ION(Non-functional Binders)
- 1 x SCN: THIOCYANATE ION(Non-functional Binders)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x PEA: 2-PHENYLETHYLAMINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kumar, M. et al., Crystal Structure of the Complex of goat Lactoperoxidase with Phenylethylamine at 2.47 A. To be Published
- Release Date
- 2014-01-22
- Peptides
- Lactoperoxidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A