- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.98 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 1 x CA: CALCIUM ION(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
NAG.3: 5 residues within 4Å:- Chain A: N.95, R.96, I.315, Q.568
- Ligands: IOD.9
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.95
- Salt bridges: A:R.96
NAG.4: 5 residues within 4Å:- Chain A: N.205, S.208, A.214, V.215, Q.217
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.205, A:S.208, A:V.215, A:Q.217, A:Q.217
NAG.5: 4 residues within 4Å:- Chain A: N.241, A.244, W.384, K.388
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.388, A:K.388
NAG.6: 2 residues within 4Å:- Chain A: N.332, S.334
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.332
- 15 x IOD: IODIDE ION(Non-functional Binders)
IOD.7: 5 residues within 4Å:- Chain A: R.45, W.46, N.341, V.342, W.452
Ligand excluded by PLIPIOD.8: 2 residues within 4Å:- Chain A: N.80, P.145
Ligand excluded by PLIPIOD.9: 3 residues within 4Å:- Chain A: R.96, R.506
- Ligands: NAG.3
Ligand excluded by PLIPIOD.10: 2 residues within 4Å:- Chain A: F.309, W.530
Ligand excluded by PLIPIOD.11: 4 residues within 4Å:- Chain A: R.397, I.559, T.560, K.561
Ligand excluded by PLIPIOD.12: 3 residues within 4Å:- Chain A: H.565, A.566, F.567
Ligand excluded by PLIPIOD.13: 1 residues within 4Å:- Chain A: I.387
Ligand excluded by PLIPIOD.14: 3 residues within 4Å:- Chain A: L.224, A.225, R.271
Ligand excluded by PLIPIOD.15: 1 residues within 4Å:- Chain A: S.359
Ligand excluded by PLIPIOD.16: 2 residues within 4Å:- Chain A: P.236, T.425
Ligand excluded by PLIPIOD.17: 2 residues within 4Å:- Chain A: K.462, T.463
Ligand excluded by PLIPIOD.18: 3 residues within 4Å:- Chain A: N.216, Q.217, F.229
Ligand excluded by PLIPIOD.19: 2 residues within 4Å:- Chain A: E.373, P.375
Ligand excluded by PLIPIOD.20: 3 residues within 4Å:- Chain A: Q.409, N.410, N.473
Ligand excluded by PLIPIOD.21: 2 residues within 4Å:- Chain A: P.197, S.198
Ligand excluded by PLIP- 1 x SCN: THIOCYANATE ION(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.25: 3 residues within 4Å:- Chain A: H.377, T.378, H.429
2 PLIP interactions:2 interactions with chain A- Water bridges: A:T.378, A:H.429
EDO.26: 4 residues within 4Å:- Chain A: A.35, L.36, R.41, R.338
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:S.33, A:S.33
- Water bridges: A:A.35, A:G.37, A:A.42, A:R.338
- 1 x 3HY: 3-(hydroxymethyl)phenol(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Singh, A. et al., Crystal structure of the complex of goat lactoperoxidase with 3-hydroxymethyl phenol at 1.98 Angstrom resolution. To be published
- Release Date
- 2013-10-23
- Peptides
- Lactoperoxidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.98 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 1 x CA: CALCIUM ION(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)
- 15 x IOD: IODIDE ION(Non-functional Binders)
- 1 x SCN: THIOCYANATE ION(Non-functional Binders)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x 3HY: 3-(hydroxymethyl)phenol(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Singh, A. et al., Crystal structure of the complex of goat lactoperoxidase with 3-hydroxymethyl phenol at 1.98 Angstrom resolution. To be published
- Release Date
- 2013-10-23
- Peptides
- Lactoperoxidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A