- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.2: 4 residues within 4Å:- Chain A: N.241, A.244, W.384, K.388
1 PLIP interactions:1 interactions with chain A- Water bridges: A:K.388
NAG.3: 4 residues within 4Å:- Chain A: N.95, R.96, I.315, Q.568
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.95, A:R.96, A:Q.568
NAG.4: 3 residues within 4Å:- Chain A: N.332, S.334, V.335
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.332
NAG.5: 7 residues within 4Å:- Chain A: N.205, S.208, L.210, L.212, A.214, V.215, Q.217
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:N.205, A:S.208, A:V.215, A:Q.217, A:Q.217
- Water bridges: A:Q.217, A:Q.217
- 1 x CA: CALCIUM ION(Non-covalent)
- 13 x IOD: IODIDE ION(Non-functional Binders)
IOD.7: 5 residues within 4Å:- Chain A: R.45, W.46, N.341, V.342, W.452
Ligand excluded by PLIPIOD.8: 1 residues within 4Å:- Chain A: W.530
Ligand excluded by PLIPIOD.9: 3 residues within 4Å:- Chain A: N.216, Q.217, F.229
Ligand excluded by PLIPIOD.10: 2 residues within 4Å:- Chain A: N.80, P.145
Ligand excluded by PLIPIOD.11: 1 residues within 4Å:- Chain A: P.236
Ligand excluded by PLIPIOD.12: 3 residues within 4Å:- Chain A: H.565, A.566, F.567
Ligand excluded by PLIPIOD.17: 3 residues within 4Å:- Chain A: K.462, T.463, G.466
Ligand excluded by PLIPIOD.18: 2 residues within 4Å:- Chain A: A.225, R.278
Ligand excluded by PLIPIOD.19: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPIOD.20: 4 residues within 4Å:- Chain A: R.397, I.559, T.560, K.561
Ligand excluded by PLIPIOD.21: 3 residues within 4Å:- Chain A: N.95, R.96, R.506
Ligand excluded by PLIPIOD.22: 3 residues within 4Å:- Chain A: S.359, E.373, K.402
Ligand excluded by PLIPIOD.23: 2 residues within 4Å:- Chain A: L.199, R.202
Ligand excluded by PLIP- 1 x SCN: THIOCYANATE ION(Non-functional Binders)
- 1 x OTR: 4-(2R-AMINO-1-HYDROXYETHYL)PHENOL(Non-covalent)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.15: 6 residues within 4Å:- Chain A: R.76, N.80, P.149, K.150, R.418, N.419
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.76, A:N.80, A:K.150, A:R.418
PEG.16: 4 residues within 4Å:- Chain A: R.45, W.46, L.47, P.48
1 PLIP interactions:1 interactions with chain A- Water bridges: A:A.49
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Singh, R.P. et al., Crystal structure of goat lactoperoxidase in complex with octopamine at 2.1 Angstrom resolution. To be Published
- Release Date
- 2014-06-18
- Peptides
- Lactoperoxidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x CA: CALCIUM ION(Non-covalent)
- 13 x IOD: IODIDE ION(Non-functional Binders)
- 1 x SCN: THIOCYANATE ION(Non-functional Binders)
- 1 x OTR: 4-(2R-AMINO-1-HYDROXYETHYL)PHENOL(Non-covalent)
- 2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Singh, R.P. et al., Crystal structure of goat lactoperoxidase in complex with octopamine at 2.1 Angstrom resolution. To be Published
- Release Date
- 2014-06-18
- Peptides
- Lactoperoxidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A