SMTL ID : 3uez.1 (1 other biounit)

Crystal structure of the human Colony-Stimulating Factor 1 (hCSF-1) cytokine in complex with the viral receptor BARF1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.41 Å

Oligo State

hetero-6-6-mer

Ligands

6 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 6 residues within 4Å: Chain A: P.53, F.54, F.57, F.58, N.75, H.78 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.54 NAG-NAG-BMA.2: 8 residues within 4Å: Chain B: P.53, F.54, F.57, F.58, N.75, H.78, K.159, D.160 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:P.53, B:F.54 Hydrogen bonds: B:P.53 NAG-NAG-BMA.3: 6 residues within 4Å: Chain E: P.53, F.54, F.57, F.58, N.75, H.78 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:F.54 NAG-NAG-BMA.4: 8 residues within 4Å: Chain F: P.53, F.54, F.57, F.58, N.75, H.78, K.159, D.160 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:P.53, F:F.54 Hydrogen bonds: F:P.53 NAG-NAG-BMA.5: 6 residues within 4Å: Chain I: P.53, F.54, F.57, F.58, N.75, H.78 1 PLIP interactions: 1 interactions with chain I Hydrophobic interactions: I:F.54 NAG-NAG-BMA.6: 8 residues within 4Å: Chain J: P.53, F.54, F.57, F.58, N.75, H.78, K.159, D.160 3 PLIP interactions: 3 interactions with chain J Hydrophobic interactions: J:P.53, J:F.54 Hydrogen bonds: J:P.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elegheert, J. et al., Allosteric competitive inactivation of hematopoietic CSF-1 signaling by the viral decoy receptor BARF1. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-08-22

Peptides

Secreted protein BARF1: ABEFIJ
Macrophage colony-stimulating factor 1: CDGHKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

E
A

F
D

I
A

J
D

C
E

D
F

G
E

H
F

K
E

L
F

Secreted protein BARF1

Macrophage colony-stimulating factor 1

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