SMTL ID : 4adq.2 (1 other biounit)

CRYSTAL STRUCTURE OF THE MOUSE COLONY-STIMULATING FACTOR 1 (MCSF-1) CYTOKINE IN COMPLEX WITH THE VIRAL RECEPTOR BARF1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.50 Å

Oligo State

hetero-6-6-mer

Ligands

3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 5 residues within 4Å: Chain A: P.53, F.54, F.58, N.75, H.78 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.54 Hydrogen bonds: A:P.53 NAG-NAG-BMA-MAN.3: 5 residues within 4Å: Chain E: P.53, F.54, F.58, N.75, H.78 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:F.54 Hydrogen bonds: E:P.53 NAG-NAG-BMA-MAN.5: 5 residues within 4Å: Chain I: P.53, F.54, F.58, N.75, H.78 2 PLIP interactions: 2 interactions with chain I Hydrophobic interactions: I:F.54 Hydrogen bonds: I:P.53

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 5 residues within 4Å: Chain B: P.53, F.57, N.75, S.77, H.78 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:P.53 NAG-NAG-BMA.4: 5 residues within 4Å: Chain F: P.53, F.57, N.75, S.77, H.78 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:P.53 NAG-NAG-BMA.6: 5 residues within 4Å: Chain J: P.53, F.57, N.75, S.77, H.78 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:P.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elegheert, J. et al., Allosteric Competitive Inactivation of Hematopoietic Csf-1 Signaling by the Viral Decoy Receptor Barf1. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-08-22

Peptides

SECRETED PROTEIN BARF1: ABEFIJ
MACROPHAGE COLONY-STIMULATING FACTOR 1: CDGHKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

E
B

F
C

I
B

J
C

C
G

D
H

G
G

H
H

K
G

L
H

SECRETED PROTEIN BARF1

MACROPHAGE COLONY-STIMULATING FACTOR 1

Related Entries With Identical Sequence