SMTL ID : 3uez.2 (1 other biounit)

Crystal structure of the human Colony-Stimulating Factor 1 (hCSF-1) cytokine in complex with the viral receptor BARF1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.41 Å

Oligo State

hetero-6-6-mer

Ligands

6 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 6 residues within 4Å: Chain A: P.53, F.57, F.58, N.75, S.77, H.78 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.53 NAG-NAG-BMA.2: 5 residues within 4Å: Chain B: P.53, F.57, F.58, N.75, H.78 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:P.53 Hydrogen bonds: B:P.53 NAG-NAG-BMA.3: 6 residues within 4Å: Chain E: P.53, F.57, F.58, N.75, S.77, H.78 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:P.53 NAG-NAG-BMA.4: 5 residues within 4Å: Chain F: P.53, F.57, F.58, N.75, H.78 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:P.53 Hydrogen bonds: F:P.53 NAG-NAG-BMA.5: 6 residues within 4Å: Chain I: P.53, F.57, F.58, N.75, S.77, H.78 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:P.53 NAG-NAG-BMA.6: 5 residues within 4Å: Chain J: P.53, F.57, F.58, N.75, H.78 2 PLIP interactions: 2 interactions with chain J Hydrophobic interactions: J:P.53 Hydrogen bonds: J:P.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elegheert, J. et al., Allosteric competitive inactivation of hematopoietic CSF-1 signaling by the viral decoy receptor BARF1. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-08-22

Peptides

Secreted protein BARF1: ABEFIJ
Macrophage colony-stimulating factor 1: CDGHKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

E
B

F
C

I
B

J
C

C
G

D
H

G
G

H
H

K
G

L
H

Secreted protein BARF1

Macrophage colony-stimulating factor 1

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