SMTL ID : 4adf.1 (1 other biounit)

CRYSTAL STRUCTURE OF THE HUMAN COLONY-STIMULATING FACTOR 1 (hCSF-1) CYTOKINE IN COMPLEX WITH THE VIRAL RECEPTOR BARF1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.40 Å

Oligo State

hetero-6-6-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN.1: 6 residues within 4Å: Chain A: P.53, F.57, N.75, S.77, H.78, K.159 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.53

2 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN.2: 5 residues within 4Å: Chain B: P.53, F.57, N.75, S.77, H.78 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:P.53 Hydrogen bonds: B:P.53 NAG-NAG-BMA-MAN-MAN-MAN-MAN.3: 6 residues within 4Å: Chain C: W.52, P.53, F.57, N.75, S.77, H.78 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.4: 5 residues within 4Å: Chain D: P.53, F.57, N.75, S.77, H.78 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:P.53 NAG-NAG-BMA-MAN-MAN.5: 5 residues within 4Å: Chain E: P.53, F.57, N.75, S.77, H.78 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:P.53 NAG-NAG-BMA-MAN-MAN.6: 6 residues within 4Å: Chain F: P.53, F.57, N.75, S.77, H.78, K.159 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:P.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elegheert, J. et al., Allosteric Competitive Inactivation of Hematopoietic Csf-1 Signaling by the Viral Decoy Receptor Barf1. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-08-22

Peptides

SECRETED PROTEIN BARF1: ABCDEF
MACROPHAGE COLONY-STIMULATING FACTOR 1: GHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

SECRETED PROTEIN BARF1

MACROPHAGE COLONY-STIMULATING FACTOR 1

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