SMTL ID : 3ugf.2 (1 other biounit)

Crystal structure of a 6-SST/6-SFT from Pachysandra terminalis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 7 residues within 4Å: Chain A: A.407, A.408, R.410, L.419, Q.429, R.454, N.521 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.454, A:R.454

1 x NAG- FUC- NAG: alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-FUC-NAG.2: 6 residues within 4Å: Chain A: N.51, D.53, N.54, V.56, W.57, N.59 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.54, A:N.54

1 x NAG- NAG- BMA- MAN- FUC: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-FUC.3: 3 residues within 4Å: Chain A: Y.177, N.178 Ligands: GOL.9 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-FUC.4: 13 residues within 4Å: Chain A: T.179, D.206, T.207, G.208, E.245, Q.246, R.248, Y.250, R.277, N.400, T.402, T.403, Q.464 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.245, A:E.245, A:Y.250, A:D.206 Water bridges: A:D.206, A:Q.246, A:Y.250, A:R.277, A:R.277

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 1 residues within 4Å: Chain A: W.85 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.85 GOL.6: 4 residues within 4Å: Chain A: Y.75, L.76, P.77, P.543 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.27 GOL.7: 6 residues within 4Å: Chain A: K.332, E.476, T.479, Q.494, G.495, R.497 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.479 Water bridges: A:Q.494, A:Q.494, A:R.497, A:R.497, A:R.497 GOL.8: 3 residues within 4Å: Chain A: R.103, Y.123, K.192 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.103, A:Y.123, A:K.192, A:K.192 Water bridges: A:R.103 GOL.9: 5 residues within 4Å: Chain A: G.149, Y.177, N.178 Ligands: NAG-NAG-BMA-MAN-FUC.3, NAG-NAG-BMA-MAN-FUC.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.178 GOL.10: 7 residues within 4Å: Chain A: Y.48, Y.50, G.63, H.64, L.76, P.77, L.78 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.48, A:H.64, A:P.77 Water bridges: A:L.76, A:L.76 GOL.11: 6 residues within 4Å: Chain A: I.379, A.380, E.381, S.530, L.531, K.532 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.379

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.12: 3 residues within 4Å: Chain A: Y.163, S.165, N.166 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.163, A:Y.163, A:N.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lammens, W. et al., Crystal structure of 6-SST/6-SFT from Pachysandra terminalis, a plant fructan biosynthesizing enzyme in complex with its acceptor substrate 6-kestose. Plant J. (2012)

Release Date

2011-11-30

Peptides

Sucrose:(Sucrose/fructan) 6-fructosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Sucrose:(Sucrose/fructan) 6-fructosyltransferase

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