SMTL ID : 3ugh.2 (1 other biounit)

Crystal structure of a 6-SST/6-SFT from Pachysandra terminalis in complex with 6-kestose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA.1: 7 residues within 4Å: Chain A: A.407, A.408, R.410, Q.429, R.454, F.519, N.521 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.454

1 x NAG- FUC- NAG: alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-FUC-NAG.2: 7 residues within 4Å: Chain A: N.51, D.53, N.54, W.57, G.58, N.59, R.313 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.54, A:N.54, A:R.313

2 x NAG- NAG- BMA- MAN- FUC: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-FUC.3: 2 residues within 4Å: Chain A: Y.177, N.178 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN-FUC.4: 7 residues within 4Å: Chain A: Q.246, R.248, Y.250, R.277, N.400, T.402, T.403 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.248, A:R.248

1 x GLC- FRU- FRU: beta-D-fructofuranose-(2-6)-beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose

GLC-FRU-FRU.5: 7 residues within 4Å: Chain A: D.33, W.57, M.115, E.211, D.244, Q.247, Y.284 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.244, A:Q.247, A:Y.284

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 3 residues within 4Å: Chain A: Y.163, S.165, N.166 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.166

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 10 residues within 4Å: Chain A: F.22, H.23, F.24, L.70, I.71, W.73, Q.321, T.322, I.323, P.324 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.24, A:L.70, A:Q.321

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lammens, W. et al., Crystal structure of 6-SST/6-SFT from Pachysandra terminalis, a plant fructan biosynthesizing enzyme in complex with its acceptor substrate 6-kestose. Plant J. (2012)

Release Date

2011-11-30

Peptides

Sucrose:(Sucrose/fructan) 6-fructosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Sucrose:(Sucrose/fructan) 6-fructosyltransferase

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