SMTL ID : 3ugh.1 (1 other biounit)

Crystal structure of a 6-SST/6-SFT from Pachysandra terminalis in complex with 6-kestose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x NAG- FUC- NAG: alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC-NAG.1: 2 residues within 4Å: Chain A: Y.177, N.178 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 6 residues within 4Å: Chain A: A.407, A.408, R.410, Q.429, R.454, N.521 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.454

1 x NAG- NAG- BMA- XYS- MAN- MAN- FUC: alpha-D-xylopyranose-(1-2)-[alpha-D-mannopyranose-(1-3)][alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-XYS-MAN-MAN-FUC.3: 8 residues within 4Å: Chain A: D.206, Q.246, R.248, Y.250, R.277, N.400, T.402, T.403 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.250, A:R.248

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 6 residues within 4Å: Chain A: N.51, D.53, N.54, V.56, G.58, N.59 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:D.53, A:N.54 Hydrogen bonds: A:N.51, A:G.58

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: Y.163, S.165, N.166, G.167 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.163, A:N.166, A:G.167

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 12 residues within 4Å: Chain A: F.22, H.23, F.24, L.70, I.71, W.73, W.300, Q.321, T.322, I.323, P.324, A.539 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.24, A:Q.321

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lammens, W. et al., Crystal structure of 6-SST/6-SFT from Pachysandra terminalis, a plant fructan biosynthesizing enzyme in complex with its acceptor substrate 6-kestose. Plant J. (2012)

Release Date

2011-11-30

Peptides

Sucrose:(Sucrose/fructan) 6-fructosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Sucrose:(Sucrose/fructan) 6-fructosyltransferase

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