SMTL ID : 3v47.1

Crystal structure of the N-terminal fragment of zebrafish TLR5 in complex with Salmonella flagellin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.47 Å

Oligo State

hetero-2-2-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: G.179, K.180, N.211, T.212, S.213 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 7 residues within 4Å: Chain A: A.307, Q.308, K.327, N.329, Q.332, D.353 Chain B: K.384 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain B: G.179, K.180, N.211, S.213 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 7 residues within 4Å: Chain A: K.384 Chain B: A.307, Q.308, K.327, N.329, Q.332, D.353 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain A: Q.24, E.44, N.46 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.46 NAG.6: 4 residues within 4Å: Chain A: N.72, E.95, T.96, G.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.96, A:G.97 Water bridges: A:T.96 NAG.7: 2 residues within 4Å: Chain B: N.72, E.95 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.72 Water bridges: B:N.72, B:T.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoon, S.I. et al., Structural basis of TLR5-flagellin recognition and signaling. Science (2012)

Release Date

2012-02-29

Peptides

Toll-like receptor 5b and variable lymphocyte receptor B.61 chimeric protein: AB
Flagellin: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Toll-like receptor 5b and variable lymphocyte receptor B.61 chimeric protein

Flagellin

Related Entries With Identical Sequence