SMTL ID : 6bxc.2 (1 other biounit)

Crystal structure of N-terminal fragment of Zebrafish Toll-Like Receptor 5 (TLR5) with Lamprey Variable Lymphocyte Receptor 9 (VLR9) bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: A.307, Q.308, K.327, N.329, Q.332, V.351, D.353 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.72, E.95, T.96 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:E.95 Hydrogen bonds: A:E.95, A:T.96 Water bridges: A:T.96, A:T.96, A:N.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gunn, R.J. et al., VLR Recognition of TLR5 Expands the Molecular Characterization of Protein Antigen Binding by Non-Ig-based Antibodies. J. Mol. Biol. (2018)

Release Date

2018-05-09

Peptides

Toll-like receptor 5b, Variable lymphocyte receptor B chimera: A
Variable Lymphocyte Receptor 9 (VLR9): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Toll-like receptor 5b, Variable lymphocyte receptor B chimera

Variable Lymphocyte Receptor 9 (VLR9)

Related Entries With Identical Sequence