SMTL ID : 5gy2.1 (1 other biounit)

Crystal structure of a complex between Bacillus subtilis flagellin and zebrafish Toll-like receptor 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: A.307, Q.308, K.327, N.329, Q.332, V.351, D.353 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.46, E.47, T.48 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.47, A:T.48 Hydrogen bonds: A:T.48, A:T.48 NAG.3: 4 residues within 4Å: Chain A: N.72, E.95, T.96, G.97 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.72, A:T.96, A:G.97 NAG.4: 2 residues within 4Å: Chain A: G.179, N.211 No protein-ligand interaction detected (PLIP)

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.5: 7 residues within 4Å: Chain A: N.312, F.334, N.357, H.358, R.360, T.380, Q.382 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.312, A:H.358, A:R.360, A:T.380 Water bridges: A:N.312, A:G.336, A:Q.382

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, W.S. et al., A conserved TLR5 binding and activation hot spot on flagellin. Sci Rep (2017)

Release Date

2017-02-15

Peptides

Tlr5b protein,Variable lymphocyte receptor B: A
Flagellin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Tlr5b protein,Variable lymphocyte receptor B

Flagellin

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