SMTL ID : 5gy2.2 (1 other biounit)

Crystal structure of a complex between Bacillus subtilis flagellin and zebrafish Toll-like receptor 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: A.307, Q.308, N.329, Q.332, V.351, D.353 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.46, T.48 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.46 NAG.3: 3 residues within 4Å: Chain A: N.72, E.95, T.96 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.72 NAG.4: 2 residues within 4Å: Chain A: G.179, N.211 No protein-ligand interaction detected (PLIP)

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.5: 7 residues within 4Å: Chain A: N.312, F.334, G.336, N.357, H.358, R.360, Q.382 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.312, A:R.360

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, W.S. et al., A conserved TLR5 binding and activation hot spot on flagellin. Sci Rep (2017)

Release Date

2017-02-15

Peptides

Tlr5b protein,Variable lymphocyte receptor B: A
Flagellin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Tlr5b protein,Variable lymphocyte receptor B

Flagellin

Related Entries With Identical Sequence