SMTL ID : 3v9v.1

Crystal structure of the PPARgamma-LBD complexed with a cercosporamide derivative modulator

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 21L: methyl 3-{4-[({[(9aS)-8-acetyl-1,7-dihydroxy-3-methoxy-9a-methyl-9-oxo-9,9a-dihydrodibenzo[b,d]furan-4-yl]carbonyl}amino)methyl]naphthalen-2-yl}propanoate(Non-covalent)

21L.1: 21 residues within 4Å: Chain A: I.68, R.86, I.87, G.90, C.91, F.93, R.94, S.95, H.129, I.132, Y.133, L.136, M.140, I.147, S.148, M.154, L.159, F.169, M.170, K.173, H.255 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.132, A:L.136, A:I.147, A:F.169, A:K.173, A:K.173 Hydrogen bonds: A:R.86, A:R.86 Water bridges: A:S.148 Salt bridges: A:K.173, A:H.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Furukawa, A. et al., Substituents at the naphthalene C3 position of (-)-Cercosporamide derivatives significantly affect the maximal efficacy as PPAR(gamma) partial agonists. Bioorg.Med.Chem.Lett. (2011)

Release Date

2012-02-01

Peptides

Peroxisome proliferator-activated receptor gamma: A
Peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Peroxisome proliferator-activated receptor gamma

Peptide from Peroxisome proliferator-activated receptor gamma coactivator 1-alpha

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