SMTL ID : 3vmg.1

Reduced carbazole-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-3-3-mer

Ligands

3 x FE2: FE (II) ION(Non-covalent)

FE2.1: 3 residues within 4Å: Chain A: H.183, H.187, D.333 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.183, A:H.187, A:D.333, A:D.333, H2O.12 FE2.3: 3 residues within 4Å: Chain B: H.183, H.187, D.333 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.183, B:H.187, B:D.333, H2O.23, H2O.24 FE2.6: 3 residues within 4Å: Chain C: H.183, H.187, D.333 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:H.183, C:H.187, C:D.333, H2O.34, H2O.36

6 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.2: 9 residues within 4Å: Chain A: C.69, H.71, R.72, V.74, C.90, Y.92, H.93, A.94, W.95 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.69, A:H.71, A:C.90, A:H.93 FES.4: 9 residues within 4Å: Chain B: C.69, H.71, R.72, V.74, C.90, Y.92, H.93, A.94, W.95 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.69, B:H.71, B:C.90, B:H.93 FES.7: 9 residues within 4Å: Chain C: C.69, H.71, R.72, V.74, C.90, Y.92, H.93, A.94, W.95 4 PLIP interactions: 4 interactions with chain C, Metal complexes: C:C.69, C:H.71, C:C.90, C:H.93 FES.9: 9 residues within 4Å: Chain D: C.46, H.48, G.49, A.51, C.65, F.67, H.68, G.70, C.84 4 PLIP interactions: 4 interactions with chain D, Metal complexes: D:C.46, D:H.48, D:C.65, D:H.68 FES.10: 9 residues within 4Å: Chain E: C.46, H.48, G.49, A.51, C.65, F.67, H.68, G.70, C.84 4 PLIP interactions: 4 interactions with chain E, Metal complexes: E:C.46, E:H.48, E:C.65, E:H.68 FES.11: 9 residues within 4Å: Chain F: C.46, H.48, G.49, A.51, C.65, F.67, H.68, G.70, C.84 4 PLIP interactions: 4 interactions with chain F, Metal complexes: F:C.46, F:H.48, F:C.65, F:H.68

2 x 9CA: 9H-CARBAZOLE(Non-covalent)

9CA.5: 13 residues within 4Å: Chain B: G.178, D.180, H.183, I.184, A.259, I.262, L.270, V.272, F.275, Q.282, E.284, F.329, N.330 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:I.184, B:A.259, B:I.262, B:L.270, B:V.272, B:F.329 Hydrogen bonds: B:G.178 Water bridges: B:N.330 pi-Stacking: B:F.275 9CA.8: 14 residues within 4Å: Chain C: G.178, D.180, H.183, I.184, I.231, A.259, I.262, L.270, V.272, F.275, Q.282, E.284, F.329, N.330 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:I.184, C:I.231, C:A.259, C:I.262, C:L.270, C:V.272, C:F.329 Hydrogen bonds: C:G.178 Water bridges: C:N.330 pi-Stacking: C:F.275

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ashikawa, Y. et al., Structural insight into the substrate- and dioxygenbinding manner in the catalytic cycle of rieske nonheme iron oxygenase system, carbazole 1,9adioxygenase. Bmc Struct.Biol. (2012)

Release Date

2012-08-22

Peptides

Terminal oxygenase component of carbazole: ABC
Ferredoxin component of carbazole: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Terminal oxygenase component of carbazole

Ferredoxin component of carbazole

Related Entries With Identical Sequence