SMTL ID : 3vv8.1

Crystal structure of beta secetase in complex with 2-amino-3-methyl-6-((1S,2R)-2-(3'-methylbiphenyl-4-yl)cyclopropyl)pyrimidin-4(3H)-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: R.73, Y.74, Q.76 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.74, A:Y.74

1 x B02: 2-AMINO-3-METHYL-6-[(1S,2R)-2-(3'-METHYLBIPHENYL-4-YL)CYCLOPROPYL]PYRIMIDIN-4(3H)-ONE(Non-covalent)

B02.2: 14 residues within 4Å: Chain A: G.34, Q.35, G.36, D.55, G.57, Y.94, F.131, I.133, W.138, I.141, D.251, G.253, T.254, T.255 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.94, A:Y.94, A:F.131, A:I.133, A:W.138, A:I.141 Hydrogen bonds: A:T.95 Salt bridges: A:D.55, A:D.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yonezawa, S. et al., Conformational restriction approach to beta-secretase (BACE1) inhibitors: effect of a cyclopropane ring to induce an alternative binding mode. J.Med.Chem. (2012)

Release Date

2012-10-24

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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