SMTL ID : 3wd0.1 (1 other biounit)

Serratia marcescens Chitinase B, tetragonal form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: T.7, R.8, T.49, H.50, R.93 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.8, A:H.50, A:R.93 Water bridges: A:Y.212, A:Y.212 GOL.2: 6 residues within 4Å: Chain A: P.264, F.267, S.268, R.443, Y.444, T.445 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.268, A:S.268, A:T.445, A:T.445 GOL.3: 5 residues within 4Å: Chain A: R.248, T.260, F.263, P.264, S.265 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.248, A:S.265, A:S.265 GOL.4: 7 residues within 4Å: Chain A: Y.327, L.329, V.330, G.331, C.332, D.333, V.336 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.327, A:G.331, A:C.332, A:D.333 GOL.5: 6 residues within 4Å: Chain A: R.166, A.208, P.209, L.210, D.211, K.288 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:A.208, A:P.209, A:D.211, A:K.288 Water bridges: A:R.166, A:R.166, A:Q.184 GOL.6: 6 residues within 4Å: Chain A: K.397, Y.425, Y.431, D.432, D.433, S.434 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.397, A:F.426, A:D.432, A:D.432, A:D.433, A:D.433, A:D.433, A:S.434 GOL.7: 4 residues within 4Å: Chain A: W.363, N.364, D.365, K.366 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.363, A:D.365 GOL.8: 4 residues within 4Å: Chain A: A.467, Q.468, G.484, Y.485 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.468 Water bridges: A:G.484

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 4 residues within 4Å: Chain A: K.390, R.424, Y.425, Y.431 5 PLIP interactions: 5 interactions with chain A Water bridges: A:E.387, A:K.390, A:Y.425 Salt bridges: A:K.390, A:R.424

1 x DTD: DITHIANE DIOL(Non-covalent)

DTD.10: 4 residues within 4Å: Chain A: R.361, W.363, E.387, Y.391 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.361, A:R.361

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hirose, T. et al., Observation of the controlled assembly of preclick components in the in situ click chemistry generation of a chitinase inhibitor. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-09-18

Peptides

Chitinase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Chitinase B

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