- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x A1L: [2-[[(2S)-1-[bis(phenylmethyl)amino]-5-[[N-(methylcarbamoyl)carbamimidoyl]amino]-1-oxidanylidene-pentan-2-yl]amino]-2-oxidanylidene-ethyl]-diazonio-azanide(Non-covalent)
- 18 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 7 residues within 4Å:- Chain A: R.8, T.49, H.50, S.91, R.93, Y.212
- Ligands: SO4.12
Ligand excluded by PLIPGOL.3: 6 residues within 4Å:- Chain A: P.264, F.267, S.268, R.443, Y.444, T.445
Ligand excluded by PLIPGOL.4: 6 residues within 4Å:- Chain A: R.248, T.260, F.263, P.264, S.265
- Chain B: W.256
Ligand excluded by PLIPGOL.5: 7 residues within 4Å:- Chain A: Y.327, L.329, V.330, G.331, C.332, D.333, V.336
Ligand excluded by PLIPGOL.6: 6 residues within 4Å:- Chain A: R.166, A.208, P.209, L.210, D.211, K.288
Ligand excluded by PLIPGOL.7: 6 residues within 4Å:- Chain A: K.397, Y.425, Y.431, D.432, D.433, S.434
Ligand excluded by PLIPGOL.8: 4 residues within 4Å:- Chain A: W.363, N.364, D.365, K.366
Ligand excluded by PLIPGOL.9: 4 residues within 4Å:- Chain A: A.467, Q.468, G.484, Y.485
Ligand excluded by PLIPGOL.10: 5 residues within 4Å:- Chain A: Y.395, Q.398, Q.399, M.438, R.443
Ligand excluded by PLIPGOL.15: 7 residues within 4Å:- Chain B: R.8, T.49, H.50, S.91, R.93, Y.212
- Ligands: SO4.25
Ligand excluded by PLIPGOL.16: 6 residues within 4Å:- Chain B: P.264, F.267, S.268, R.443, Y.444, T.445
Ligand excluded by PLIPGOL.17: 6 residues within 4Å:- Chain A: W.256
- Chain B: R.248, T.260, F.263, P.264, S.265
Ligand excluded by PLIPGOL.18: 7 residues within 4Å:- Chain B: Y.327, L.329, V.330, G.331, C.332, D.333, V.336
Ligand excluded by PLIPGOL.19: 6 residues within 4Å:- Chain B: R.166, A.208, P.209, L.210, D.211, K.288
Ligand excluded by PLIPGOL.20: 6 residues within 4Å:- Chain B: K.397, Y.425, Y.431, D.432, D.433, S.434
Ligand excluded by PLIPGOL.21: 4 residues within 4Å:- Chain B: W.363, N.364, D.365, K.366
Ligand excluded by PLIPGOL.22: 4 residues within 4Å:- Chain B: A.467, Q.468, G.484, Y.485
Ligand excluded by PLIPGOL.23: 5 residues within 4Å:- Chain B: Y.395, Q.398, Q.399, M.438, R.443
Ligand excluded by PLIP- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.11: 4 residues within 4Å:- Chain A: K.390, R.424, Y.425, Y.431
5 PLIP interactions:5 interactions with chain A- Water bridges: A:Y.425, A:Y.425, A:D.432
- Salt bridges: A:K.390, A:R.424
SO4.12: 5 residues within 4Å:- Chain A: R.93, L.181, P.182, Q.184
- Ligands: GOL.2
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.184
- Salt bridges: A:R.93
SO4.24: 4 residues within 4Å:- Chain B: K.390, R.424, Y.425, Y.431
3 PLIP interactions:3 interactions with chain B- Water bridges: B:D.432
- Salt bridges: B:K.390, B:R.424
SO4.25: 5 residues within 4Å:- Chain B: R.93, L.181, P.182, Q.184
- Ligands: GOL.15
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.184
- Salt bridges: B:R.93
- 2 x DTD: DITHIANE DIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hirose, T. et al., Observation of the controlled assembly of preclick components in the in situ click chemistry generation of a chitinase inhibitor. Proc.Natl.Acad.Sci.USA (2013)
- Release Date
- 2013-09-18
- Peptides
- Chitinase B: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x A1L: [2-[[(2S)-1-[bis(phenylmethyl)amino]-5-[[N-(methylcarbamoyl)carbamimidoyl]amino]-1-oxidanylidene-pentan-2-yl]amino]-2-oxidanylidene-ethyl]-diazonio-azanide(Non-covalent)
- 18 x GOL: GLYCEROL(Non-functional Binders)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 2 x DTD: DITHIANE DIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hirose, T. et al., Observation of the controlled assembly of preclick components in the in situ click chemistry generation of a chitinase inhibitor. Proc.Natl.Acad.Sci.USA (2013)
- Release Date
- 2013-09-18
- Peptides
- Chitinase B: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A