SMTL ID : 3wyj.1

Structure of E. coli undecaprenyl diphosphate synthase in complex with BPH-789

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

1 x H78: [1-oxidanyl-2-[3-[3-[[3-[[3-[3-(2-oxidanyl-2,2-diphosphono-ethyl)phenyl]phenyl]sulfamoyl]phenyl]sulfonylamino]phenyl]phenyl]-1-phosphono-ethyl]phosphonic acid(Non-covalent)

H78.1: 17 residues within 4Å: Chain A: M.25, D.26, G.27, N.28, G.29, R.39, A.40, H.43, A.47, V.50, A.69, F.70, S.71, L.85, M.86, L.88, F.89 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:M.25, A:H.43, A:A.47, A:A.69, A:L.85, A:L.88, A:F.89 Hydrogen bonds: A:D.26, A:G.27, A:N.28, A:N.28, A:G.29, A:H.43, A:S.72 Water bridges: A:R.30, A:R.30, A:R.39, A:A.69 pi-Stacking: A:H.43, A:F.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, W. et al., Antibacterial drug leads: DNA and enzyme multitargeting. J.Med.Chem. (2015)

Release Date

2015-02-04

Peptides

Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)

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