SMTL ID : 3zmg.1

CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH CHEMICAL LIGAND

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

1 x 6Z0: N-[3-[(4R)-2-azanylidene-5,5-bis(fluoranyl)-4-methyl-1,3-oxazinan-4-yl]-4-fluoranyl-phenyl]-5-cyano-pyridine-2-carboxamide(Non-covalent)

6Z0.1: 17 residues within 4Å: Chain A: G.27, Q.28, G.29, Y.30, L.46, D.48, G.50, Y.87, F.124, I.126, I.134, D.244, S.245, G.246, T.247, T.248, A.351 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.87, A:F.124 Hydrogen bonds: A:D.48, A:D.244, A:G.246, A:T.247 Water bridges: A:G.27, A:G.29, A:D.244, A:R.251, A:R.323

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: H.197, Y.200 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.200 NA.3: 2 residues within 4Å: Chain A: V.157, T.160 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.157

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 5 residues within 4Å: Chain A: T.98, R.112, N.114, E.150, Q.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.114 Salt bridges: A:E.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hilpert, H. et al., Beta-Secretase (Bace1) Inhibitors with High in Vivo Efficacy Suitable for Clinical Evaluation in Alzheimer'S Disease. J.Med.Chem. (2013)

Release Date

2013-05-01

Peptides

BETA-SECRETASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-SECRETASE 1

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